Oncorhynchus tshawytscha (Chinook salmon): 112221996
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Entry
112221996 CDS
T05605
Symbol
nphp4
Name
(RefSeq) nephrocystin-4 isoform X1
KO
K16478
nephrocystin-4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112221996 (nphp4)
Cilium and associated proteins [BR:
otw03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
112221996 (nphp4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPHP4_C2_3rd
NPHP4_C2_2nd
Ig_NPHP4_1st
Ig_NPHP4_4th
Ig_NPHP4_2nd
Ig_NPH4_3rd
NPHP4_SK
Motif
Other DBs
NCBI-GeneID:
112221996
NCBI-ProteinID:
XP_024240268
UniProt:
A0A8C8DGW1
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All DBs
Position
LG22:19382359..19574124
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AA seq
1461 aa
AA seq
DB search
MTDDWKGLFERGRVIPPHSQTVRLAQDSSHTHSQGFQIILKHLDGPHIQQQKKEGESEGN
RKREPVKYQLSVSLFDTSHQHFFGRTLKSSPQQMSGVHRAMFNEVVYLHTSLRLPSVVAV
VELVALQPRADGSQHALGCGFAILHLFSSMTEPQATEGDRRLSMYHGTPRTLLHPLVRDP
IEQNKLLRPIDGAHLVCSLKPHPALAPAMHLFPQNMLVSGDENIPGVTPSPTGDSLLKPH
MVKSLTCFLDRLSISLHPSLEKFESQLLQHVSTDCHNTKHSGPESSPVVVIQERRLHVGV
HNGWGFLERPQVVVLEPTEATDWSRGRTKGGTSRQGTLTRDCSSSPSQSLALRSSLELKL
PSHQAVGIALQLEYVFSSSLIGDGKLSSTSTISRTAFMQCLRWGVWCPFQEWGALRAEEV
KLSLQGGSTPNPYGIMAYTSSSNSQSPAQVVDERDMVRFRLSSSSVQKASSSTAVSLRRS
RTGQQRKPPSPSPGQSRRASQASPPGSPQGPGLSMSQLAATSRYPTMSHSTAVSPWQQPF
SSQLYPSPLASAHQLSHVELPAASNITHLEVDLNVSPRDRLLAYQSAALANEGHLELQEL
PFTPIHAPIITMGTHAVPSSSFVSSRSSLAHLYSAGFPNITDPSGLVAEVQDPTEPVNFD
PQREEADPLQGNVLLLQFLAFSRIPQQGGSSNWPDSVHFTFQLYRFPPVTTQRLKLLGID
KLPKKSSETPPCVLAVINKDGTVNSGSPGLQLQFRVDGAFLQPGERRWFLRYLALHTLQV
DVWDSQSLLLIGSTALGLKHMLRQGRPAVQATHELEVITTEYMGEGVPVSLHRAPNPISV
FTTIKGRLHLRLGNVGCPVDQNKPNKPQCLPPSRSHIISPPDATSGFTGGSLSSKSIQRL
SVRNAARAQRLVELDGDLVPLLQSHMKEGGGTPCTNTPWWGETDDVRQRKLNRMVAVRQH
EGGQDGTGSEVKTKVTGRRAERAQLARDLRLMHAYRERSKAEGITHILSQAITVHHTLYA
TLGTAEYLEYVLRNPFNTPQTVTIYSEDPELSVITDCDEWRYFKTLTKTLTPLEEGMFHL
KEGTLAPQVYLRPKESVHVPLKYQTFISDNSVVPQGPSLIPSGRSTQVAKKHLSNTLLAK
SIKVTFRAEDGKPLAICQVSVEPTPHVIDQTFRFYQPELSFLKKALRLPSWERTPVGDTD
AGSQISVRCSDPNVICETKMLAQGEPQDVYLKVPGSPSPQIRKFFVTVFTDKWLAVPAQV
WQVYVHFLQRVDISCVTGQRTCQSLLIRGTQATRKVRCYTSHPQELKVDPAEVFVLLPGV
VQDLQLCVCPLRAGSRFCYLTVVDVEQHTLVACWLLSLTCRLPIVSKAFEMCAPVGGGRG
STRKITYTNPYPTSRVLLLRSDHPDLLQFKEDSFEIGGGETYRIGLRFAPSQSPGAQEIL
IYINNQEETTEETFCVKVKYT
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgactggaaaggactgtttgagagaggacgggtgattcctccacacagccag
actgttcgactggcacaggactcatcccacacccattctcaaggcttccaaatcatcctg
aagcatcttgatggacctcacattcaacagcagaagaaggaaggggagtcagaagggaat
cgaaagagggaaccagtcaagtaccagctgagtgtttccctgtttgataccagccaccag
cacttcttcgggagaacgttgaagagctcaccccaacagatgagtggtgtccacagggca
atgtttaatgaggtggtgtacctccacacctctctgcgtctgccaagcgtggtggccgtg
gtggagctggtggcgttacagcccagggcagacggctcccagcatgcactggggtgtggc
ttcgccatcctgcacctcttctccagcatgacagaacctcaggccaccgagggggacaga
aggctaagtatgtaccacggaacaccaaggaccttactccatccactagtgagggaccct
atagagcagaacaagctgttgaggcccatcgatggtgctcatttggtgtgcagcttgaag
cctcaccctgctctagcccctgccatgcacctcttcccccagaacatgctggtgtctgga
gatgagaacatccctggggttacgccctcccctacaggagattccctgttgaagccccac
atggtgaagagcctcacctgcttcctggacaggctgtccatctctctgcatccctccctg
gagaagtttgagagccagctgctgcagcatgtcagcacggactgccacaacacgaaacac
tctggtccggagagctcaccggtggtggtcatccaggagcggaggctccatgtgggggtc
cacaacggctggggcttcttggagcgcccccaggtggtggtgctggagccaaccgaggcc
accgattggagcaggggacgtaccaaagggggcacgtcccgacagggcacactgaccaga
gactgcagctccagtcctagtcagagcctggctctacgtagcagtctggagctcaagctg
cccagtcaccaggctgtggggatcgccctccagcttgagtatgtcttctcctcgtcgctc
attggtgacggaaagctctcctcgacctccacaatctcccggacagccttcatgcagtgt
ctgcgctggggggtgtggtgccccttccaggagtggggtgccctgagggccgaagaagtg
aagcttagtctgcagggcggctctacgcccaacccctatggaatcatggcctatacctct
tcctccaacagccaaagtcctgcccaggtggtcgatgagagggacatggtcaggttccgt
ctgtcttccagctcagtgcagaaggcctcgtccagcacagccgtgtctctaaggaggagc
aggacaggacagcagaggaaacctccctcaccctcaccaggtcaaagccggcgtgcctct
caagcatctcctccgggatcgccacaaggcccagggctctctatgtctcagctggcagct
acttcacgctacccgaccatgagccactccactgccgtgtcgccatggcaacagccgttt
tcctctcagctctatccttccccattggcatcggcccaccagctgtcacatgtcgagctc
ccagctgccagcaacatcacccaccttgaggtggacctaaacgtgtcccctagggaccgc
ctccttgcataccaatctgccgcgctggccaacgagggccacctggagctccaagagctg
ccgttcacccccatccatgcccccatcatcaccatgggaacacatgctgtgcccagctct
tcctttgtgagttcccggagctccctggcccacctctactcagccggcttccccaacatc
acagaccccagtgggctggtggctgaagtgcaggacccgacagaaccagtcaactttgac
ccccagagagaggaggcagatcccctgcagggcaatgtgctcctgctgcagtttctggca
ttttccaggataccacagcaaggggggagcagcaactggccagactctgttcatttcacc
ttccagctctaccgcttcccaccagtgaccacacagcgcctgaaactactgggcatcgac
aagctgccgaagaaatccagcgagacgccaccctgtgtcctggccgtcattaacaaggat
ggaacagtcaactctggctccccggggctccagctgcagttccgtgtggacggggcattc
ttgcagccgggtgagagacgctggttcctgcgctacctggccctgcacactctgcaggtg
gatgtgtgggacagccaatccctcctgcttatcggctccacagccctggggctcaagcat
atgttgcggcagggccgtccagctgtacaggccactcatgagctggaggtcatcaccaca
gagtacatgggtgaaggtgtgccggtgagcctgcaccgggcccccaacccgatcagtgtc
ttcaccaccatcaaaggtcggctccatctgcgcctgggcaacgtgggatgtcctgtagac
cagaacaaacccaacaagccccagtgtcttcctccgtcacgctcccacatcatctcaccg
ccggatgccacaagtggcttcaccgggggcagcttgtcctccaagagcatccaacgactc
agcgtgcgtaacgcagcgcgggcccagaggctggtggagctggacggggacctggtgccg
ttgctccagagccatatgaaggagggcggtgggacgccctgcactaacactccctggtgg
ggcgagaccgacgacgtacgccagcgcaaactcaatcgcatggtggccgtgcggcagcac
gaggggggacaagatggcaccggcagcgaggtcaagactaaggtcacgggccgccgagca
gagcgtgcccagttggcgcgggacctgcgcctgatgcatgcctacagggaacgcagtaag
gcagaagggatcacccacatcctgagccaggccatcaccgtacaccacaccctctacgcc
acgctgggcaccgctgagtacctggagtatgtcctccgcaaccccttcaacaccccacag
actgtcaccatctatagcgaagaccccgagctcagtgtcataacggactgtgacgagtgg
aggtatttcaagacactgaccaaaaccttaacccccctggaggagggcatgttccacctc
aaagagggcacgcttgccccccaggtgtacctgcggcccaaggagagtgtgcacgtcccc
ctcaaataccagaccttcatctcagacaactctgtggttccccaggggccgagtctcata
cccagtggcagaagtactcaggtggccaagaaacatctgtccaatactttgctggccaag
tcaatcaaggtgacattcagggcagaggatggtaagccgctggccatctgccaggtgagc
gtggagcccacgcctcacgtcattgaccagacattccgcttctaccagccagagttgtcc
tttctgaagaaggccctgcgccttccctcctgggagagaacgccagttggagacacagat
gctgggtctcagatctcagtgcgctgcagtgaccccaacgtcatctgtgaaacaaagatg
ttggcacaaggggagcctcaagatgtatatttaaaagtgccgggcagtccgagcccgcaa
atccgaaagttcttcgtcacagtgttcactgataagtggctggcggtgcccgcccaagtc
tggcaagtatatgtgcacttcctgcaacgggtggatatcagctgtgtgactggccagcgg
acctgtcaatcactgctgatacggggcacccaagccacccggaaggtccggtgttacacc
tcgcacccacaggagctcaaggtggacccagcggaggtgtttgtcctcctcccgggtgtg
gtacaggacctgcagctgtgtgtgtgtccgttgcgggcgggcagccgcttctgctacctc
accgtggtggacgtggagcaacacacgctggtggcctgctggctcctcagcctcacctgt
cgcctgcccatcgtctccaaggcttttgaaatgtgtgcacctgtgggagggggtcggggg
agcacacggaagatcacttacaccaacccctaccccaccagccgtgtcctcctgctacgg
tcagaccaccctgacctgctccagtttaaagaggacagttttgagattgggggaggggag
acctaccgaatcgggctgcggtttgctcccagccaaagtcctggtgctcaggagatcctc
atctacatcaacaaccaggaggagaccacggaggagaccttctgtgtgaaagtgaaatac
acctga
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