Oncorhynchus tshawytscha (Chinook salmon): 112222144
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Entry
112222144 CDS
T05605
Name
(RefSeq) methyl-CpG-binding domain protein 5 isoform X1
KO
K26585
methyl-CpG-binding domain protein 6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112222144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112222144
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
112222144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
Motif
Other DBs
NCBI-GeneID:
112222144
NCBI-ProteinID:
XP_024240549
LinkDB
All DBs
Position
LG22:24252329..24263745
Genome browser
AA seq
1545 aa
AA seq
DB search
MEIWPCGNPNPIKVLQSSFYKMMGGSESGSGDKDGVHTVAIQVPIGWQRRAKDGLVVYVS
PSGAVLSSLEEVKSYLLTDGTCKCGLECPLVIHKVFNFSLGVKIQQHSQPVGKAEQDMTK
LCNHRRKVVAMAALCRSMQASQLPYVARHTEVTSGIMENRDPKRMRVDREEKERGTYTSK
HHLVQSRPNNNLHPNSCGSPKNSPQLVYSYNGSSPLSHNSTNSYHTPDILRRLPPPLNLP
PNTSPFSSYGATQRSPRTPTPQNLSQGQRAPQTPEALRSPHMRPLSPPPSSPGTLGRGGQ
SHQHGIIVGSPLSPSCSPSPSVSMNCPSPRQRSRHPSTSSAHSEQGVGGVVLGGYPPRRI
SSSSSHSPIPGGSPILHFSKYKLEDILEQFKNSGNSSTNNHILHPNSLSNQNNPHILSLA
LEKVGMPTKAPASASGMEISAGPSGLPLGKFLNHQKQPHPASFPASSLLSAAAKAQLASQ
MIHNQSSNSRSILNSALSLEVSRESKQLKVTNSTLHNSLPSIARPLSAASPLLSLSQPLA
SSPLHLSRTDRTSHRKRQRRSPTVLSMLKESQMTGPRTPGEVLNLSSHSQPSSTSASPYP
AMLENHLQALRLSVRHSGTLAGPQKQPDGALDFTTIMAGQPDPPTQPLSALLHLLSVQNA
QATGAQPGSGHCTGGMRQSPRQSPSPSHLNIRPFPVQSPTNHSTTQGPSQPLSPSQSKSR
RGNAQSPSRPHTRTSPKQRRSPSMALSNAQSAQYCSSPSPTPHTPNRLWQAQNQPMDATT
IQSPIGQAFPEVSESMEMESMSTLGPGLNSTSTSNHSSSVTSYSSTTSPRPLDLSNHMLA
LLAASSTTPLGEGGLDRTTGNNTTGVQEPQSVDHQGSTVTKPPGGCSPQALGDSTCSLPL
AEAFPFMSQEQLLQLLSATAGLPSLLDPTILGSLPLGLWIGGQQGHLPISNTPQQHHQLP
DQQLLQQSEQQLLLQHEQQQKQHQTAHLNHNFPFSLFPCLMGGQGELPLNLLGLLNPLLP
PSAAPTPGQECDLGMGEKLGLQALLMASLLLGQQQTAMLPLSGLGQLSLDLPFRQHIPAL
LDGLSLDKGSGLLDPSSLPGPGLLEALQGLLPPADGHLQALQSLLLSTPLPPPAFLSLSP
DLLTAALGSTGLPPAPHLPLTQQPPPQVSASGHDGGMETLIPLSVQGKDNPVLHQLLPTL
LNPGVLGDLSALTSLHSLLGLGAGPLFLPPVQASALGMPLLQGPDGAINLLNNIQLNMAP
PSEGEKPISLQETDSSTLQEDIPANRLTPETAPSPCPALAPVSQRGEGSVVSILDPYASF
MDTIYTSFLQVSAKEQEAVQSGADAFGALPPSYPGERRSPSALLPQVSAPLSLSPRQACT
LRNPDLSRLNMEAAHSPAQGTPKPSNDGSNTPPQNKLEFPECHTNPPLLPIYLEEAKTDS
YSQAVSDRQGDRPQAGGYQSPRDGSSCPKEETGGLQHTEQGRNQTAQMGGARRGRKRKQT
LQNVLEDFRELDSPALEEPKPRVVLLKPERSVRGRRRRGARSQRQ
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atggaaatatggccgtgtgggaaccccaaccctataaaggtgctgcaaagcagtttttac
aaaatgatgggaggcagtgagagtggcagtggagacaaggatggagttcacactgtggca
atacaagtccccattggctggcagaggagagcgaaggacgggcttgtggtgtatgtcagt
ccaagtggcgcagtcctgtcctcactggaagaggttaagtcatatctgttgaccgatggc
acatgcaagtgtggcctcgagtgtccgctggtcatccacaaggtgtttaactttagccta
ggggtcaaaattcaacagcacagccagccggtggggaaggcagagcaggacatgacaaag
ctctgtaaccatcggaggaaagtggttgccatggcagcgctctgtcgcagtatgcaggct
tcacaactgccctatgttgcccgtcacacagaggtcaccagtggcattatggagaacaga
gatcctaagaggatgagagtggacagggaagaaaaagaacgtggcacttacacctccaaa
caccatctagtccagtccaggcccaacaataacctccaccccaactcttgtggcagtcct
aaaaattctccccaacttgtgtattcttacaatggctcctcacccctctcacacaatagc
actaactcttatcacacgcctgatattttgaggagactgccacctcctctcaatctcccc
cccaacacctctccattctccagctatggggcaactcagaggtccccacgcacaccaacg
cctcagaatctcagtcagggtcagagggcaccacagactccagaagccctcagatctcct
catatgaggcccctctctccccctccctcctcccctggaacactggggaggggagggcag
agtcatcaacatggtatcatcgttgggtctcccctgtccccctcatgttccccctctccc
tctgtgagtatgaactgcccctctccccgccagcgctcacgccacccctccacctcttct
gctcactctgagcagggggtgggaggggtggtgcttggtggctacccccccagaaggata
tcctcttcctcctcacactctcctataccaggggggtcccctatcctccatttctcaaaa
tacaagcttgaggacatcttagagcagtttaagaactctggcaacagtagcactaataat
cacatccttcacccaaactcactgagcaaccaaaacaatcctcatatcctctctctagct
cttgaaaaggttgggatgcccacaaaggcacctgcttctgcctcaggcatggagatcagt
gctggtccttctggtttgcctcttggaaagttcttgaaccaccagaagcaaccccaccca
gcttcttttcctgccagcagtctcctctcggcagcagccaaggcccagctggccagccag
atgattcacaaccagagctccaattcgcgcagcatcctcaactcagccctctctttggag
gtctcgagggagtctaagcaattgaaggtaacaaacagcactttacacaacagccttccc
tcaatcgctaggcccctgtctgcagcctcccccctgctttccctctcccagcccctagcc
tccagtccccttcacctctcccgtacggaccggacatcccacaggaagcggcagcggcgt
tcgcccacagtgctcagcatgctgaaggagtcccagatgaccggtcccagaacccccggc
gaggtgctcaacctctcctcgcactctcaaccctcctctacctcagcctcgccctacccc
gccatgttagagaaccacctccaggccttaaggctctcagtccggcactctggcacactc
gcagggccccagaagcagcctgacggcgccctggatttcacaacaatcatggcaggtcaa
ccggatccccccacccagcctctctctgctctgcttcacctgctcagtgtgcagaacgct
caagccactggagcccagcccggctctggacactgcacaggaggcatgaggcagagcccc
aggcagtctccctcgccctcccatttaaacatcagaccattccccgtgcagtcccccact
aatcacagtaccacacaaggcccatcacagcccctctctccctctcagtcaaagtccagg
cgaggtaatgcacagtctccgtctcgaccacatacgaggactagtcccaaacagagacgg
tctccttccatggccctgtccaacgctcagtcagcacaatattgcagtagcccctcgccc
accccacacacccctaataggctgtggcaggcccaaaaccaacctatggatgccaccacc
atccagtcacccattggccaggcctttcctgaagtcagtgaatcaatggagatggagagc
atgtcaacactaggccctggtctcaacagcacctccacctccaaccatagcagcagcgtc
accagctatagcagcaccacctcccccagacccctggatctcagtaaccacatgctggca
ctgctggcagcctcttccaccacacctcttggggaggggggcctggacagaaccaccggc
aacaacactacaggggtgcaagagcctcagagtgttgatcatcagggctccacagtgacc
aaacccccgggaggctgcagcccccaggccctgggggactccacttgctccttacccctg
gctgaagccttccccttcatgagtcaggagcagcttctccagcttctatctgccacggcc
ggcctgccctccctcctggaccccaccatcctgggctctctgcccctgggcctgtggatt
ggcggtcagcagggtcacctccccatctccaacacacctcagcaacaccatcaactgccc
gatcaacaactactacaacaatcagaacaacaactactgttacagcatgagcaacagcag
aaacaacaccagactgcccatctgaaccacaactttccatttagcttattcccctgtcta
atgggaggtcagggagagctgcctctgaatctcctgggtctgttgaacccactgctaccc
ccttctgctgcccctaccccaggccaggagtgtgatctggggatgggggagaaactgggc
ctccaggctctcctcatggcctccctgctactaggccagcagcagactgccatgttgccc
ctgtctgggcttggccagctgagcctggacctccccttccggcagcacatcccagccctg
ttggacggtttgtctctggataaagggtctggactcctggacccgtcatcccttcccggc
cctgggctccttgaggccctccagggcctgcttcccccagctgatgggcacctccaggcc
ctgcagtcgctcctgctctccacccccctgcctcccccggccttcctttccctcagccct
gatctgctaactgctgccctgggctctactggcctcccgcctgcccctcatctcccccta
acacagcaacccccacctcaggtctcagcttcaggccatgatggggggatggaaactcta
atccccctgtctgtccagggaaaggacaaccctgtcctccaccagttactgcctactctc
ctcaacccaggggttctaggagacctgtctgctctgaccagcctccacagtcttctgggg
ctaggtgcaggccctctcttcctgccccccgtacaggcctctgccttgggcatgcctctg
ctccagggccctgatggggccatcaacctcctcaacaacatccagctcaacatggcacca
ccctcagagggagaaaagccaatctccttacaggaaacagacagctccacccttcaagag
gatattccagccaatcggcttaccccagagactgcgcccagcccctgtcccgccctggcc
cccgtgtcccagcgtggagagggctccgtggtgagcatcctggacccctacgcttccttc
atggacactatctacacctccttcctccaggtcagtgctaaagagcaggaagcagttcag
tctggggcagatgccttcggtgccttaccgccctcctaccctggggagcgccgttccccc
tccgctctcctccctcaggtcagtgcccccctctccctaagccctcggcaggcctgcacc
ctgaggaacccggacctgtctcggctcaatatggaggcagcccactccccggctcagggc
acccctaaacccagcaacgatggctccaacacgcccccgcagaacaagttggaattccca
gagtgtcacactaaccctcctctgcttcccatctacctggaggaagccaagacagactcg
tacagccaggctgtgtcagatcggcagggggacagaccccaggcaggagggtaccagagt
cccagagacgggagcagctgccccaaggaggagactgggggtctacagcacacggagcag
ggcaggaaccaaactgcacaaatggggggagccagaagaggcaggaaaaggaaacaaacg
ctacagaatgtgctagaggacttcagagaactggattctccagccctagaggaacctaaa
cccagggtggtgctgctgaagcctgagaggtcggtccggggcaggaggcggcggggagcc
aggtcccagagacagtga
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integrated database retrieval system
