Oncorhynchus tshawytscha (Chinook salmon): 112222151
Help
Entry
112222151 CDS
T05605
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112222151
04518 Integrin signaling
112222151
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112222151
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112222151
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112222151
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
112222151
NCBI-ProteinID:
XP_024240564
UniProt:
A0A8C8D0E2
LinkDB
All DBs
Position
LG22:complement(24363943..24392424)
Genome browser
AA seq
1420 aa
AA seq
DB search
MFSFVDSRTVLLLVASQIVLLSIVRCQEEDDHVVIGAKGQKGEPGEIADVVGANGPAGPM
GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPAGLGGNFAAQMAG
GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGESGPAGPLGPHGPP
GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA
GAKGEGGAPGENGASGPMGPRGLSGERGRPGPSGSAGARGNDGLPGPAGPPGPVGPAGAP
GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS
GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPIGPHGAPGPA
GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT
GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP
GPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ
GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGSQGLQGPRGLPGTP
GSDGPKGAIGPSGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR
GLTGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP
GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV
GSPGPNGNPGAAGPAGPAGKDGPKGVRGDSGTPGRQGDAGLRGAAGAPGEKGDAGGDGLP
GPDGPSGPQGLGGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP
GLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ
GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP
GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGPAGPPGNP
GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQ
IENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY
PSIANVPQKNWWTSKSNDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ
SLTYHCKNSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVMEDDCKKHTGQWGK
TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGTVCFL
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaaattgtttta
ctatccattgtcagatgtcaggaagaggatgaccacgtggtgattggtgctaagggccag
aagggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg
ggcccctcaggcgagcagggacctcgtggatcagccggagctaagggtgataagggaaat
gttggccccagaggcagagatggcgagcctggcaccccagggaaccccggaccccctggc
ccacccggacctaatggacctgcaggccttggcgggaactttgctgctcagatggctggt
ggattcgacgagaaagctggaggtgcacagatgggagtgatgcaaggacctatgggccct
atgggtccccgtggtccccctggcccttctggagcccctggcccacaaggtttccaaggt
aaccccggagagactggagagtcaggcccagctggcccactgggaccacacggaccaccc
ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag
cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga
atcaaaggacacaggggtcaccctggtctggatggagctaagggagaaggcggtgctgct
ggagccaagggtgagggtggtgctcccggagagaacggcgcgtctggaccaatgggacca
cgtggtctgtctggcgagagaggccgtcccggaccttctggctctgctggtgcccgaggt
aatgatggcttgcctggccctgctggtcctcccgggcctgttgggcctgctggagcaccc
ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact
gagggcgcacagggaccccgtggagaggctggtacacccggatctcctggacccgctggt
gcctctggcaaccctggcactgatggtatccctggagctaaaggatctgctggcgcttct
ggaattgccggtgcacctggtttccccggaccccgtggcccccccggacctcagggagca
acaggacctcttggacccaagggacagtctggagaccctggtattcctggcttcaaagga
gaggctggtcccaagggagagcttggccctataggtccccatggcgcccctggccccgct
ggtgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct
cctggcgagagaggagctcccggtaaccgtggtttcccaggtcaggatggtcttgctggt
tctaagggagcccctggtgaccgtggtgttcccggcgtgggtgggcctaagggaggcact
ggtgaccctggccgcacaggagagcctggtcttcctggagccagaggtctcactggtcgc
cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggatggt
cgccccggcccacctggtcctcagggagcccgtggccagcctggtgtgatgggattcccc
ggaccaaagggagccaatggtgagcctggcaaggcaggagagaagggtcttgtgggtcgt
caaggtctgatcggtctggctggtaaagatggtgagactggtgctgctggacctctcggc
cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag
ggtctgcccggacctgctggccccccaggagagggaggcaagcctggtgatgcgggtgtt
cctggagaggctggtgctgctggtgctactggacctagaggcgagcgtggtttccctggt
gagagaggcggtgctggatctcagggtctgcagggacctcgtggacttcctggaactccc
ggaagtgatggaccgaagggagccattgggccatctggtggtgctggagctcagggaccc
ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggcgccaagggc
gacagaggtgacaatggagagaaaggacctgagggcgcttctggaaaagacggttctaga
ggtttgactggtcccattggtcctcctggcccagctggtcccaatggcataaagggcgag
ggtggaccttctggcccaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt
gagggtggtccccccgggcctgctggcttcgctgggccacctggtgcagatggtcagcct
ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcccatggacct
caaggaccctctggggcccctggacctgtgggtcctactggtgtttctggacctaaagga
gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt
ggttctcccgggcctaacggtaaccctggtgctgctggccccgctggtcctgctggtaaa
gacggtcctaagggagttcgtggtgactctggaaccccaggaagacagggagacgctggg
ctgcgtggagctgctggagcccctggcgagaagggagatgctggaggggatggtctccct
ggtcccgatggtccttcaggtccccagggtctgggtgggtcacgtggtattgttggtctg
cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt
aagcagggagctcctggtgctggtggtgaccgtggaccccctgggcctgtggggcctcct
ggactgtctggaccttctggcgagcccggaagagagggcaacgctggatctgatgggccc
cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt
gcacctggcgctcccggcgctcccggtgcccccggccctgtcggccccctgggcaagcag
ggagacagaggagagggaggtgctcaaggacctgccggacccgctggaccagctggcgct
agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga
gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcctggacctcca
ggctccgctggagaccagggagctgctggacctgccggacctagtggtgctaagggaccc
cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga
ccccctggacctcgtggtcgttctggagaaactggccctgctggtccacctggtaacccc
ggaccccctggtcctcctggtcctcccggccctggcatcgacatgtctgcctttgctggc
ctgtctcagcctgagaagtctccggatcccctgaggtacatgagagctgacgaggcgtcc
agctccctgaggcagcacgacgtggaggtggactccacactcaagtccctcaacaaccag
atcgagaacctgcgcagccctgatggtagccagaagaaccctgcccgcacctgcagagac
ctcaaactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt
agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac
cccagcatagccaacgtgcctcaaaagaactggtggacaagcaagagcaacgaccgcaaa
catgtctggttcggagagaccatgaatggaggattccacttcagctacgctgaggacggt
accaacgccgccagtatccagctgaccttcctgaggctgctgtccacggaagcgtctcag
agcctcacctaccactgcaagaacagcgtggcctatatggacgcatccacgggcaacctg
aagaaggctctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc
cgcttcacctacagcgttatggaggatgactgcaagaaacacacaggccagtggggaaag
actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc
atggacattggaggagcggaccaggagttcggtgtggatgtgggaacagtctgcttcttg
taa
DBGET
integrated database retrieval system
