Oncorhynchus tshawytscha (Chinook salmon): 112222169
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Entry
112222169 CDS
T05605
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112222169 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112222169 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112222169 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112222169 (col9a3)
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Others
112222169 (col9a3)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
112222169
NCBI-ProteinID:
XP_024240598
UniProt:
A0AAZ3QA17
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Position
LG22:complement(25192460..25214533)
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AA seq
678 aa
AA seq
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MAMFSALGLLLLCLLLTSSTAQRPGPRGAVGPPGPPGPDGKDGTDGKDGPAGLSGKAGPK
GKAGRAGGPGNPGLPGLPGVDGLTGADGPAGKDGPPGDVGDAGPSGPGGPPGRGRPGAPG
PPGANGLEGGIGPQGPAGPEGLPGLSGPPGPDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGNAGPPGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGTAGIIGKTGDAGEKGPEGFRGPKGEIGKIGPKGVSGGAGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRNGVPGEKGPNGLPGLQGKAGAKGAKGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGEAGPRGVAGGVGPVGNIGVQGSKGFQGIKGALGDPGLPGPTGIRG
GFGERGPVGASGPKGDMGMAGADGLPGENGEPGPFGPVGQKGESGKRGELGPKGVVGPQG
ELGARGVPGKPGLMGFQGEQGLPGIAGKIGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLSPGQVGRPGAAGLPGKVGETGSIGHPGSRGPPGYRGLPGDLGDPGPRGDLGEQGDK
GPIGKAIEGPIGDQGYQGIPGVLGIVKDGRDGSPGDPGEPGEAGRTGRTGHSGSPGICDT
TACQGANVHGKTSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctatgttttcagctctcgggctgctcttgctgtgcctgcttttgacatcatccaca
gcccagagacccggcccacgaggagcagtcggaccgccaggacccccgggacccgatgga
aaggatggcactgatggcaaagatggcccggctggactttcaggaaaagctggacccaag
gggaaagcagggagagcaggaggaccagggaacccaggcctgcctggcctccctggggtg
gacggattgacaggtgctgatgggcctgctgggaaagacggtcctccgggggatgtgggc
gacgctggaccttctgggccaggtggacctcctggcagagggagaccaggagctccaggg
ccacctggagccaatgggcttgagggtggaatcgggccacagggaccagcgggccctgag
ggtcttccaggattatccgggcctcccggccctgatggaccaccaggtcttcctggggct
ctccctgatggcagtggagatctgttgtgtcctgccatctgtcctcctggcccctctggc
cctccaggaatgcctggattcaagggtcacacaggtcacaaaggagataagggagagctc
gggaaagatggagagaagggtaatgctggcccacctggtcctccagggattcccggcact
gtcggcctgcagggtcctcgtggtttgaggggacttcagggcccaatgggggcagtagga
gacaggggtttaccaggtttccgaggcaaacctggtactgctggcatcatcggcaagaca
ggtgatgctggagagaaaggaccagagggatttagagggccaaagggagagattggcaaa
attggcccaaagggagtttctggcggagcaggacccaaaggggagcccggcatcccaggc
agagacgggaaagatggcacccagggactggatggcgagaagggagacgctggacggaat
ggggtacccggtgagaaaggacccaacggccttcctgggttacaaggaaaggctggcgca
aagggcgccaaaggaggagttggtgacccaggagagatgggagaggcagggccatctgga
gagccaggtattcctggtgacattggtattccaggagagaggggcgaggcgggacccaga
ggagtggctgggggcgtcggaccagtgggcaacatcggggttcagggcagcaaaggcttc
cagggaataaagggggctcttggtgaccctggccttcccggaccaaccgggattcgcggc
ggatttggtgagaggggtccagttggagcatcaggccctaaaggagacatgggcatggca
ggagctgatggtttgcccggggagaatggagaacctggtccatttggtccagttggccaa
aaaggagagtctgggaagcgtggcgagctgggacctaaaggtgttgtgggaccacaggga
gagctcggagccagaggggttcctgggaaaccaggcctaatgggcttccagggtgaacag
ggtctgcctggaatcgctggcaagattggtgttcccggtaaactggcaagtgaacagcac
attagagaattgtgtggatctatgattgatgatcagattgcacagctggctgccaacctc
agaaggcccctgtcccctggccaagtgggtcgccccggtgctgccggacttccagggaaa
gtaggagagactgggtctatcggtcaccctggctcccgtggacctcctggctacagagga
ctgcctggagacctgggagaccccggtcccagaggtgatcttggtgaacagggtgacaag
ggacccatcggaaaggccatcgaagggcccattggagaccaaggataccaaggtatccca
ggagtgcttggaatcgtcaaagacgggcgtgacggatccccaggagatccaggtgagcct
ggagaggcaggtaggacaggaaggactgggcactcgggctccccaggaatctgtgacact
accgcctgccagggggcaaatgtccatgggaaaacctccaatcccaagaaccattaa
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