Oncorhynchus tshawytscha (Chinook salmon): 112222179
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Entry
112222179 CDS
T05605
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112222179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112222179
03036 Chromosome and associated proteins [BR:
otw03036
]
112222179
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112222179
Coactivators
SAGA/TFTC/STAGA complex
112222179
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112222179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
112222179
NCBI-ProteinID:
XP_024240620
LinkDB
All DBs
Position
LG22:complement(26158720..26169712)
Genome browser
AA seq
968 aa
AA seq
DB search
MAAGSDLLDDVFFNTEVDEKVVSDLVGSLESELTGSGRGKSSVRVQAAANHIDNSAVGRN
SNVQDSEMGLSQELAKPGTGVPGGVINSRRSQGSTMYAAVGTTAVGSSMTAGHSPSKTGA
VSGVITEVPDHGVGIRKTGAAGVQTLNGRSVVINSHNSGSVAALVSSASSTVPAVAVVNN
GPSSVVKGNVVLPSTSSTVIQTPLMHNAVTSTVISSQLSVLNSVPTVTLVRPPMQPLGTV
TAQSGSNNTVLIRSVNVAHPASSEAQINTLESPKTTTQTTSEVTGPSVVGKSLVLQNVRT
SIPSTIAACSGGIKAIAPQVFSPRLPQPQQNASNIQNIQLPPGMVLVRSESGQLLMIHQQ
TLAQMQSQSQSAMTPRAATPTSTPPVQITSVQAPGTPMMSRQVTPTTTITKQGSTTQTTV
QATTTLQRPPVLQQNTIMLGGAAATSGQAPVQPCSAAVTQRAGTPGTPGAPTVVSTMEIL
ENVKKCKNFLSTLIKLASSGKQSSETTANVKELVKSLLESKIEAEDFTSRLYRELNSSPQ
PYLVPFLKRSLPALRQMTPDSAAFIQQSQLPHTGAQPAAPSKALTAAVLGGMSTAQNSRL
NSSSPGAKGTMHQSPVISLAQTPHSKPGLMVPQQQGAMGRPQVTLAQSPMVTLRGQPHSH
IIMGQPQVVRQLPTVPVVKQALAPGAKVTMGPQSMLSVVLKNRQKEAGGGTFKDDDDIND
VASMAGVNLSEESARILATNSELVGMVTRSCKDEAFLYTSSLTQRVHEIGGRLGVTDLGP
EVISYVSHATQHRLQNLLEKLTVVAQQKSITFKEDDKCEQVSDVRAQLKFFEQLDQMEKQ
RKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELNQIRQKEANMTALAAIGPRK
KRKMNSPVSGTGAEDLCSGPSPSGGYSSGGSRPQRQRITRVNLRDLLFCLENERETSRSH
LLYKGLLK
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctccgatttactggatgatgttttcttcaacacagaggtggacgagaaa
gtagttagtgatctagtcgggtctttggagtctgagctcacgggatcgggtcgtggaaag
tcttcagttagggtccaggctgcagcaaatcacattgacaactcagctgtaggtcgcaat
tccaatgtccaggacagcgaaatgggactttcacaagagcttgctaaaccagggactggc
gtgccagggggggtcattaatagtaggaggtcccagggttcaaccatgtatgctgcggtc
gggacaacggcggtgggatcgagcatgacagccgggcacagtccgagcaagactggggca
gtcagtggtgtgataacggaggttcccgatcacggtgttgggatcagaaaaactggggcg
gctggtgtacaaactttaaatggaaggagcgttgtgataaactctcataattcaggaagt
gttgccgctttggtgagctcggcaagcagcacagtgcccgccgtcgcggttgtcaacaac
ggaccgagctccgtagtcaaaggaaacgtagtcttaccctcaacttccagcacagtcatt
caaacacctcttatgcacaatgctgtcacttcaactgtgatatcgtctcagctgtctgtt
ctaaacagtgtgcccactgtcacgctcgtgaggccgcctatgcaacccctcggaacagtc
accgcgcagagcgggagtaataatacggttctgatacgatctgtcaacgttgcccaccct
gcaagttcagaagcgcaaatcaacacattggagtctccaaaaacgaccacacaaacgact
tcagaagtgaccgggcccagtgttgtaggtaaaagcctggttttacaaaatgtgaggacc
tccatcccatcgactattgcagcctgttctggtgggataaaggcgatcgcgccacaggtg
ttctccccgagacttccgcaaccccaacaaaatgcttcaaacatccaaaacattcagctc
cctccaggcatggtgctggtacgcagtgaaagtgggcagcttctgatgatccaccagcag
accctggcccagatgcaatcccagtcccagagtgccatgaccccacgggcagccaccccc
accagcactccccctgtccagatcacttctgtacaggctccagggacacccatgatgtcc
cgtcaggtgacccccaccaccaccatcactaagcagggctccacgacccagaccaccgtc
caggccaccaccaccctccagaggcctcctgtactacaacagaacaccattatgctgggt
ggagcggccgccacctcaggtcaggctccagtgcagccttgctcggcagcagtcacccag
agagcagggacccctgggacaccaggcgcccccacggtcgtttctaccatggagatcctg
gagaatgtgaagaagtgtaagaacttcctgtccacgctgatcaaactggcatccagcggg
aagcagtcgtctgagaccacagccaacgtcaaggagttagtcaagagcctgctggagagt
aagatcgaagcggaggacttcaccagtcggttataccgggagctcaactcctctcctcag
ccatatctcgtgcctttcctcaagaggagtcttcctgcactgcgtcaaatgaccccagac
tcggcagccttcatccagcagagccagctgcctcacactggcgcccagcctgccgccccc
tccaaggccttgactgctgcggtgctggggggcatgtccacggcacagaactcccgtctc
aacagtagtagccctggggccaaggggaccatgcaccagtctcctgttatcagcctggcc
cagacacctcatagcaagcctggcctgatggtgcctcagcagcagggggcaatggggagg
cctcaggtgactctggcccagtcacccatggttacgctccgaggccagccccacagtcac
atcatcatggggcagccgcaggtggtcagacagcttccgacagttcctgtagtgaagcag
gctctagcaccaggagccaaggtaacaatggggccccagtctatgctctctgtagtactg
aagaacaggcagaaggaggcaggcggaggaaccttcaaggatgatgatgatataaatgac
gtggcctctatggctggagtcaacctatcagaggagagtgcccgcattctggcaaccaac
tctgagctggtcggcatggtgactcgctcttgtaaagacgaggccttcctctacacctcc
tcactaacccagagagtacatgagataggtgggaggttaggggtgactgacctggggccg
gaggtgatcagctacgtgtcccatgcaacacagcatcggctgcagaacctgctggagaaa
ttgacggtggtggcgcagcagaaaagcatcaccttcaaggaggatgataagtgtgaacag
gtgagtgacgtgcgagcacagctgaagttctttgagcagctggatcagatggagaaacag
aggaaggaggagcaggagagagagatcctgatgaaggcagctaagtctcgatcacgacaa
gaggacccagagcagcttcggcttaaacagaaggctaaagagatgcagcagcaggaactg
aatcagatcaggcagaaggaggccaacatgacggccctggcagccatcggccccaggaag
aaaaggaaaatgaactcccctgtcagcggaaccggggctgaggacttgtgctctggtccc
tctccgtcaggtgggtacagtagcggaggctccaggcctcagcgccagcgcatcacccgg
gttaacctcagggacctgctcttctgtctggaaaatgaaagggagaccagccgctcacac
ctgctctataaaggcctcctcaaataa
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