Oncorhynchus tshawytscha (Chinook salmon): 112222207
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Entry
112222207 CDS
T05605
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112222207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112222207
03036 Chromosome and associated proteins [BR:
otw03036
]
112222207
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112222207
Coactivators
SAGA/TFTC/STAGA complex
112222207
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112222207
STAGA complex
112222207
TFTC complex
112222207
SAGA complex
112222207
SLIK complex
112222207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_VPS8
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
Tricorn_2nd
WD_LRWD1
LisH_PAC1
DUF4431
PROPPIN
LisH_TPL
Beta-prop_ACSF4
RAB3GAP2_N
VID27
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
112222207
NCBI-ProteinID:
XP_042159779
LinkDB
All DBs
Position
LG02:70537273..70545158
Genome browser
AA seq
749 aa
AA seq
DB search
MAAVQDGQLNMEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADADDSPVSDSAGAGSGGVPNVSADGGDANSLLSRV
SIATPFAPPATAPPKVVAASGGEDQPDVNVVLSAYSQQGDPVLYPLYYNGLKKFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILSSMSKKEH
MKGNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTLFHPNSNYVATGSADRT
IRLWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDGRVLLWDVGHGLMVGELKGH
TDTIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLL
GTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggtcagctcaatatggaggtcgaaaaagacataaaaacagaa
ataacaaacgatgggtctggaaacatcaatgcaaactcttcgtcacccggttctacgtct
tcaggcggtaaatcgaaatctccagcgggatcgggtgaagatcaacagacactgctcgcg
gtgttgcaatttctcaagaggaataaattgaccgagtcggtcgacattttgcggcgagaa
gcgggcttatctgcagatgcagatgattcccctgtatccgattcggcgggagctggctcg
ggtggcgtcccaaatgtcagtgctgatgggggggatgccaactctctcctcagccgagtg
tcaatcgccacccccttcgcacccccggccaccgcacccccaaaagtggtggcagcatca
ggtggggaagaccaaccagacgtcaacgttgtcttgtcggcctatagccagcagggggac
cctgtcctctacccactctactataacggcctgaagaagtttatagagtctgtcctggac
tgccacagagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggag
ctggtctacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggtgac
caggagtgttactacgaggaggacctccgcatcctctccagcatgtccaagaaggaacac
atgaagggaaacgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcc
cgagactcctaccagctgttgaagaggcacctgcaggaacgtcagaacaaccagatctgg
aatattatacaggaacatctctatattgatatctttgacgggatgcctcggagtaaaagt
cagattgatgccatgtcgggcagtctggcaggggagggcaagagagatgccaacaaagcc
aaggtgttctatggtcttctgaaggagccagagatcgaggtacctctggacgatgaggat
gaggaggcagagaacgaggagggcaaacccaagaagaagaaaccgaagaaggacagcatg
ggctccaagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctcccc
gagctgaaggactctgacaagctggacaagatcatgaacatgaaggaggccacgaagaag
attcgtctgggcccagacaacctaccctccatctgtttctactccttcctcaacgcttac
cagggtctgacagcggtggacttcacagatgactccagtctgatcgcggggggcttcgct
gactccaccgttagggtgtggagcgtcacacccaagaaactacgccgggtcaaatctgca
gcagacctgagtaatattgataaagagtctgatgacgtgttggagaggatcatggatgag
aagacggccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagc
ttcagccctgacaggaactacctgttgtccagttctgaggacggtacggtcagactgtgg
agtctgcagacattcacctgtctggtggggtataaaggacacaactaccctgtctgggac
actcagttctcaccctatggttactactttatctctgggggacatgaccgagtcgctcgt
ctgtgggcgactgaccactaccagcccctgcgtatgttcgctggtcacctggctgacatc
acgtgcaccctcttccaccctaactccaactacgtggccacgggttcagctgaccgtacc
atccgcctctgggacgtcctgactggaaactgtgtccgcatcctcacgggtcacaagggt
cccattcattccctggccttctcccccaatgggaagttcatggcctcgggagcaactgac
ggcagggttctactgtgggatgttggtcacggcctgatggtcggagagctgaagggacat
actgacaccatctacgccctcaagttcagcagggacggagagatactagcctcaggctca
atggataacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggat
gacttcaccgcagcaacaggtcacatccatctaccagagaactcccaggagctgttgcta
ggcacctacatgaccaagtccacccctgtcattcacctgcacttcacccgcaggaaccta
ctgctggctgcaggggcctacaacccatga
DBGET
integrated database retrieval system
