Oncorhynchus tshawytscha (Chinook salmon): 112222272
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Entry
112222272 CDS
T05605
Name
(RefSeq) VPS10 domain-containing receptor SorCS1 isoform X1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112222272
Membrane trafficking [BR:
otw04131
]
Protein recycling
Others
Others
112222272
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
PSII_BNR
Motif
Other DBs
NCBI-GeneID:
112222272
NCBI-ProteinID:
XP_042159549
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Position
LG02:67990517..68154133
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AA seq
1288 aa
AA seq
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MERVVRLCPIWHNNVFWFMLLIIIYFFLAAKSELTCRSCQPGDKGRIKELLLKTDTRVFA
TGYGEEVIGNGDGATDSRSLNSASAETQQLDCAAGSDACIQGKYIYSRRKRNTDMLFRSK
NALLDGGMHYGGGKQRKFTPRGEYKVSNLKMNLHAGNTDVGKARADLIPGITHKHRVRRN
SPRANIGDDKVKSSGSPKRRETLPLSYSREGITSPAGRSRVTRSELRWSNEDRRAASSRQ
DELKLTSSTFALTGDSAHNQAMVHWSGQNSSVILMLTKLFDFNLNSVTESSLWRSTDYGT
TYQKLNEKVGAKTILSYLYVSPNNKRKIMLLTDPEVESSLLISSDEGATYQKYRLSFYIL
SLLFHPEQEDWILAYSHDQKLYSSVEFGRRWQLVHERVAPNRFYWSKTGLDKEPGLIHLE
TIISEGQALYVTCKLQNCTEANKGKPFPGYIDPNSLVVQDEYVFVQVSTGGRPIYYVSAK
REVFTPMKLPKYTLPKDLHVISTDENRVVAAVQEWNQNDTYNLYVSETGGVFYTLALENV
VSSMGHEGNVMIDLYEVAGIKGMFLANKKTDNVVKTYITYNRGRDWRLLQAPTADLRGNS
IRCELPYCSLHLHLHVSANPYTSGNIESKDSAPGIIVASGSIGAELTTSNVSMFITSDAG
NTWRQIFDEEYSVLYLDQGGALVAIRHTPLPIRHLWMSFDEGRQWNKYSFTMSPLFVDGL
LGEPGEETLIMTIFGHVSHRSEWQLVKIDFRSIFNRRCTEGDYQTWHLHNRGEPCIMGVK
RIYRKLKPIARCVMGKTYSVTMTSAPCDCTEADFECDYGYERRSDGKCTPAFWFLPSSMS
RSCTTGTTFINSTGYRKVVSNNCTAGVIAEYTARRQHCPTQAPKGLHLVTSEGKLTATLG
TNVTFLVFLEEGDGARTSIMVDFGDGHALTYSNVSSIEDGVKHVYKAVGIYRVSATGENR
LGSESVVLYLHVTCQLEYIHLSAPFVAVKSKEVNLTAVLWPSQVGTVTYIWWFGNNTEPI
ITLEGSVACTFSREGVNTVTVQVSAGNAILQDRKTIAVHEYFRSHLLAFSSNLDDHNPDV
AEWRLDVSRVIKNSMVKATGVSPELLLVTVLPALPTAAEFFLLPDKGLTEGKPEKNSAHL
DQLSEILLSALNQNLVQFTLRPGVQVTVYAAHLSAAPLVDTSENHSGSAMLMLLSVVVLG
LAIFVVYKFKRKIPGLNVYAQMQNEKEQEMIPSPVSPTESTLVSPNTPMELVTSPELMDT
DLNTRPIGCIKPHAHVKFSTELPTYINI
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggagagggttgtcagattatgccctatttggcacaataacgttttttggtttatgctt
ttgataatcatatatttctttctagccgctaaatcagagctaacttgcagatcatgtcag
ccgggagataaggggcgtattaaggaattactgcttaaaacggacacacgagtattcgca
acagggtacggagaggaagttattggaaatggagacggggcaactgattcacggagttta
aattctgcaagtgccgaaactcaacagcttgattgcgcagctgggtccgatgcatgcatc
caggggaaatatatctactcaaggcgaaaacggaatactgacatgctgttccgttccaag
aacgcactactcgatggaggaatgcactacggtggtggtaaacagagaaaattcaccccg
cgcggtgagtacaaagtttccaacctgaaaatgaaccttcatgcaggaaatacagatgtc
gggaaggctcgcgcagatttaattcccggcatcacacacaagcaccgagttcgtaggaac
agcccgagagctaatattggggacgataaagtgaagtcctccggctcacccaagagaagg
gagacgctgcctctgagttactctcgagagggcatcacctcaccggctgggcgcagcaga
gtgacacggtccgaattgcgatggagcaacgaggacaggagagcggccagttcgaggcag
gacgaactcaaactcaccagttcaaccttcgctttgaccggagattccgctcacaaccaa
gccatggtgcactggtctgggcaaaacagcagtgtgattctcatgctgaccaagctgttt
gacttcaacctgaacagtgtcacggagagctcgttgtggaggtcaaccgactacggaacc
acttaccagaagctcaatgagaaagtgggggcgaaaacaatcctcagctacttgtacgtc
agtcccaacaacaagagaaagatcatgcttctgactgacccggaggtggaaagcagcctg
ctgatcagctccgatgaaggagccacctatcagaagtaccgcctcagcttctacatcctc
agccttctcttccaccccgagcaggaggactggatccttgcctacagccatgaccagaag
ctgtacagctcggtggagtttggaaggaggtggcaacttgtccatgagagggtggccccc
aatcgattctactggtcaaaaacgggtttagacaaagaaccgggcttaattcacctggaa
accatcatctctgaaggacaggcgctgtacgtcacctgcaagctgcagaactgcaccgag
gccaataagggcaagccgttccctggctacattgaccccaattcccttgtggtgcaagac
gagtatgtgtttgtccaggtgtcaactggtgggcgtccaatctactacgtgtcagccaag
cgggaagtcttcacacccatgaagctacccaaatacaccttgcctaaggatctacatgtg
atcagtacggatgagaaccgggtggttgcggcggtgcaggagtggaaccagaacgacacc
tacaacctgtacgtgtcagagactggaggggtcttctacaccctggccctggagaacgta
gtcagcagcatggggcacgagggcaacgtcatgatagacctgtatgaggtggcgggaata
aaagggatgttcctcgccaacaagaagacggacaacgtggtgaagacttacatcacctac
aacagagggagagactggaggctcctgcaggctcccaccgctgacctgaggggcaacagc
atccgctgtgaactaccatactgttccctacacctccatctgcatgtgtcggccaacccc
tacacatcggggaatatcgagagcaaggactctgctccggggatcatcgtggcctcaggc
tccatcggagcggagttgaccaccagcaacgtgagcatgttcatcacctcggacgccggc
aacacgtggagacagatctttgatgaggagtacagtgttctctacctggaccaaggaggg
gccctggtggctataagacacactccactccccatccgacacctatggatgagtttcgac
gaggggagacagtggaataaatacagtttcaccatgtctcctctgtttgtggacgggttg
ctaggggagccgggggaggagactctcatcatgacgatctttggccacgtcagtcaccgg
tccgagtggcagctggtcaagatcgacttcaggtccatcttcaaccggagatgtacagag
ggggattaccagacatggcacctacacaaccggggcgagccgtgcatcatgggagtgaaa
agaatctacaggaagttgaagcccatagccaggtgcgttatgggtaagacatactcggtc
acgatgacctcggcgccctgcgactgcacagaggccgactttgagtgtgactatggctac
gagaggcggagtgacggcaagtgcacccccgccttttggttcctcccatcgtccatgtct
agaagctgtaccacagggactactttcatcaacagcactggctacaggaaggtggtgtcc
aataactgcacagcgggagtcatagcagagtacacggccaggaggcagcactgtcctacc
caggcccccaaaggcctgcacctcgtcaccagtgaaggaaagctgacagctacgctgggc
accaatgtcaccttcctggtgtttcttgaagagggtgacggagccaggacgagcatcatg
gtggacttcggggacggtcacgctctgacctactccaacgtgagctccatagaggatggg
gtcaagcacgtctacaaggctgtggggatctaccgtgtgtccgctacaggagagaacagg
ctggggtctgagagcgtggtgctgtacctccacgtcacatgtcagctggagtatatccat
ctctccgctccctttgtggcagtgaagagtaaggaagtcaacctcaccgctgtgctgtgg
cctagccaagtgggaacagtcacctacatctggtggttcggaaataacactgagccgata
atcaccctggaagggagcgtagcgtgcacgttctcccgggaaggcgtcaacactgtcacc
gtgcaggtgtccgctgggaatgccatcctgcaggaccggaaaaccatcgctgtccacgaa
tatttcaggtcacatctactagccttctcatctaacctggatgaccacaaccccgatgtg
gccgaatggagactggacgtcagcagagtcatcaagaactccatggtcaaagccacaggg
gtgagcccggagctgctcctcgtcaccgtcctaccagcgttgcccacggctgcagagttt
ttcctcctgccagacaaagggttaacagagggcaagccagagaagaactctgctcattta
gaccagctctctgaaatcttgcttagtgccctcaaccaaaacctggtccagttcaccctt
cggcctggggtccaggtcacagtatacgctgcacatttgtcagcagcgcccctagtggac
acgagtgagaaccacagcggctcggccatgctgatgctgctgtcggttgtggttctgggt
ttggcgatatttgtcgtctacaaattcaaaaggaagatcccaggcctcaacgtctatgcg
cagatgcagaacgaaaaagaacaagaaatgatcccgagtccagtaagtccgacggaaagc
accctggtgtccccgaacactccgatggagctggtgacttctccggagcttatggacaca
gacttgaacacaaggcccatcggatgcatcaaacctcacgcacatgtcaagttctcaacg
gaactccccacgtacatcaacatttaa
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