Oncorhynchus tshawytscha (Chinook salmon): 112222541
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Entry
112222541 CDS
T05605
Name
(RefSeq) integrin alpha-8 isoform X1
KO
K06584
integrin alpha 8
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04514
Cell adhesion molecules
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112222541
04514 Cell adhesion molecules
112222541
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112222541
09142 Cell motility
04820 Cytoskeleton in muscle cells
112222541
04810 Regulation of actin cytoskeleton
112222541
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112222541
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin alpha subunits
112222541
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
Integrin_alpha
Motif
Other DBs
NCBI-GeneID:
112222541
NCBI-ProteinID:
XP_042160613
LinkDB
All DBs
Position
LG23:complement(15206937..15257805)
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AA seq
1056 aa
AA seq
DB search
MCAYRMYAFGGMLCRVVSVLWPVLSVVSGFNLHAEHPAVYRGPEGSYFGYSVDFYRPTPE
SSTLSVLVGAPKANTSQPGIIEGGAVYYCPYPLNPDPTKQPYSCTQIPFDNTNNRMIKVN
GTREPLEFKSHQWFGASVRTHKGKVVACAPLYHWRAVKVNGEKDPVGTCYVAVQNFSAYA
EYSPCRTNDPDPEGQGFCQAGFSVDFTKEGTLVVGGPGSFYWQGQVMTAGVAEILNGYSL
KAVLRRVPGEKHTHAAADTHDDSYLGYSVAVGEFTGDSEQELIAGVPRGAQNFGYVAVIN
STNLTFIMNFTGEQMASYFGYSVTVSDLNGDGYDDVLVGAPLYMERERESKPKEVGRVYL
YLQHSPLTFSEPLLLTGTHTFGRFGTAIAPLGDLNQDGYNDVAVGCPFGGEDRSGLVLIY
NGQRDLTARGLTLSQELYGAWASSSGLSGYGFTLRGDRDLDNNHYPDLIVGAFGKGEVSV
YRARPVVSVEAEMILTPRILNPDDRSCFLTESDTMVTCLRVDICAKVSGVGIPDSVVLNA
ELQLDWLKGVRGGVKRVYFLDSHQPQHTGVLTLGHSRPHSCLNYTVYLRGEDEFRDKLTP
ISLALNYSLAPPSNLDLPPVLNRYSSTFLQEQAYILLDCGEDNECIPDLQLTASIDRTEL
VVGDDNLVMLTINAVNKGEGAYETELHTLLPPEADYIGVERRIEALSRLNCEYRMVNDSR
LVVCDLGNPMVAGTEVSVGLRFAVQRLDDAGPHIDFDLQIHSSNKDSSKSNPVSLSLSIS
ARAQLDLRGVCHPSQVVLPFPHWEPKENPVKEDDVGPQVTHIYELHNSGPSSIREAELQV
GWPSRFRDEHLLYALEVLTDGPISCRSNTSLNPLGLQTSSVQDTPELLGFLRNSSSPHRY
RRATNAAQPYSSKTLNCSNIICLRVLCVVGRLDRGQSAVVKIRSRLWAHTFLQRRNDPYL
LNSTVSFRVTALPYRLQPSSLPQHTTSMGTLVLWGTPDVAFAIPLWVIILAILLGLLVLA
MLTLAMWKCGFFDRARPPADDVSDREQLTSDQLADA
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgcctataggatgtatgcatttggtgggatgttgtgtcgcgtggtgtcggtgcta
tggcctgtcctttcggttgtctcgggcttcaacctgcatgcggagcaccctgcggtgtac
cgaggaccagaggggagctactttggttactccgtggacttctaccgaccgacccccgaa
agcagcacgttgagtgtgttggtgggagcgcccaaggccaacacatcccagccaggcatc
atagagggaggagctgtctactactgtccctatcccctaaaccctgaccccaccaagcaa
ccctacagctgcacacagatacccttcgacaacaccaataacaggatgattaaggttaat
ggcaccagggagcctctggagttcaagtcacaccagtggtttggagcctcagttagaact
cacaaaggcaaagtggtggcctgtgctcctctctaccactggcgtgctgtgaaggtgaac
ggtgagaaggacccggtaggaacctgctatgttgccgtgcagaacttcagcgcctacgca
gaatactcaccctgtaggaccaatgatccagacccggagggacagggtttctgccaggcc
gggttcagcgtggacttcaccaaggaggggacactggtggtgggtggacctggcagcttc
tactggcaaggtcaggtgatgactgcaggcgtagcagagatattgaatggttactctctg
aaagccgtgctcaggagagtccctggagagaaacacacacacgctgcagctgatacccat
gacgacagctacctaggttactctgtggcagtgggggaattcacaggagactcagagcaa
gagctgatagctggtgttccgagaggggcacagaactttggatatgtagctgtgattaac
tccactaatctgacattcatcatgaacttcacaggagagcagatggcttcctactttggc
tattctgtgactgttagtgacctcaacggagatgggtatgatgatgtactggtaggagcc
cctctctacatggagagagagagggagagtaaacccaaggaggtgggccgtgtctacctg
tacctccagcactccccgctcaccttctccgagccccttcttctgacgggaacacacacc
tttggacgctttggcactgccatcgccccactaggagacctcaaccaggacggatacaac
gacgtggcggtgggttgtccgtttggtggggaggaccggagtggcctggtgttgatctac
aatggccagagagacctgacggcccgcggcctaaccctcagccaggagctctatggagcc
tgggcatccagtagtggcctctccggctacggcttcaccctgaggggggacagagacctg
gacaacaaccattaccctgatctgatagtgggagcatttggtaaaggggaggtgtcggtg
tacagggctcgtcctgtagtgtcagtggaggcagagatgatcctgactcctagaatcctg
aaccctgatgaccgatcctgcttcctgacagaatctgataccatggtgacctgtctaagg
gtagatatttgtgcaaaggtgagcggtgtggggatcccagactctgtagtcctgaatgca
gagctgcaactggattggcttaaaggtgtgaggggcggagttaagagagtttatttcctg
gattcccatcagccccagcacacaggggtcctaacgcttggccacagccgtcctcactcc
tgcctgaactatactgtctacctacgaggggaggatgagtttagggataaattgactccc
atctcattggctctgaactacagtttagcccctccttccaacctggacctcccccctgtt
ctcaaccgttacagcagtaccttcctgcaggaacaggcatatattctgctggactgtggg
gaagacaacgagtgtattccagacctccagctaactgcaagcatagaccgtacagagctg
gtggtcggggatgacaatctggtcatgttgaccataaacgcggttaacaaaggagagggg
gcatatgagacagagttacacacactcctaccccctgaggctgattacataggagtggaa
cgcaggatagaggctctatccaggttgaactgtgagtacaggatggtgaatgactccaga
ctggtggtgtgtgacctggggaaccctatggttgccggaacagaagtatctgtaggttta
aggtttgctgtccaaaggctggatgatgccggtcctcacattgactttgacctacagatc
cacagttcaaacaaagacagctccaagagcaacccagtcagtctgtctctctccatctct
gccagagctcagctagacctgaggggggtgtgtcatccctctcaggtggttcttccgttt
ccgcattgggagcccaaagagaatccggtcaaagaggatgacgtaggaccccaggtcaca
cacatctacgagctccataactcaggtcccagtagtatccgggaggcggagctccaggtg
ggctggccctctcgtttccgtgacgaacacctgctctacgctctggaggttctaacagac
ggaccaatcagctgccggagcaacaccagcctcaaccccctgggcctacagacatcctct
gtccaggacactccagaactgttgggctttctgaggaacagtagctctcctcaccgctac
agacgtgccacaaatgctgcccagccctacagcagcaagaccctgaactgcagtaacatc
atttgtctaagagttctgtgtgtggtcgggcggttggaccgtggtcagagcgctgtagtc
aagatccgctcccgactctgggctcacaccttcctccagagacgtaacgacccatacctc
ctcaactctaccgtgtccttcagagtgacggccctgccctaccgcctccaaccctcctcc
ttaccccaacacaccacttcaatgggtacactggtgctgtggggaactcctgatgtggcg
tttgctattcctctgtgggtcatcatcctagccatcctactgggactgctggtcctggcc
atgctaacactggccatgtggaagtgtggtttctttgaccgggctcggccgccagcggat
gacgtgtcagaccgtgagcagctgacctctgaccaattagcagatgcctaa
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