Oncorhynchus tshawytscha (Chinook salmon): 112222872
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Entry
112222872 CDS
T05605
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 2 isoform X1
KO
K19619
tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112222872
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
112222872
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos2
Motif
Other DBs
NCBI-GeneID:
112222872
NCBI-ProteinID:
XP_024241486
UniProt:
A0A8C8G705
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Position
LG23:14165446..14168880
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AA seq
580 aa
AA seq
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MGDKKQDSVERPADGNKNQTSDSLQQVTAPGNSKGRKKRGKKKRSAKKMEDKEGEMDKFA
PLQSVLVQSQSEESSPAQSPSVQADPPLGQSNREKPTPEQPIPEQPKPETPKPAQRNPAQ
PLTGHQNPATLPSALPNQAQPEQPNPVHPNLSQPPLDHLSLTQSKDQPTEAQPHPDQGPP
TRLSTDQSSPQQSSPDQPDPSSPHQSSPDQSSPNQSSPDQSSPQQSSPDHPDPSSPHLSS
PDPSFPHQSSPDQSSPQQSSPDHPDPSSPHQSSPDQSYPNQSSPDQSSPQQSSPQQLLPK
HPDQSSQSSPDEDKPKKKGDPNKLSLLTWNIDGLDLNDIKERLSRLLDYLIKYHPDIVLL
QEVISPIYQVLQQVLKPYHVLPGSDRSYFTVILLRKSRVQLLESSIVNYPTTEMRRNLLM
AHVSFLGHPLCVMTSHMESMKPRSLERQNQLRTVWKTMREQPQDHSVIFGGDTNLRDWEV
KNQGGLPENICDVWESLGQPEDCRYTWDCVTNDNKDLPFPARLRFDRIFLRQAGEGSKVS
PDGITLVGLERLNDCQRFTSDHWGLLCTFVIKPLSQATPE
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaagaaacaagactcagtggaaaggccagcagatggcaataagaaccagacg
agtgactccctccaacaggttacagcccctggaaattccaaggggagaaagaagagagga
aagaaaaagaggagtgccaagaagatggaggacaaggagggagagatggacaaatttgcc
ccattgcagtctgtcctggttcaatcacaatcagaggaatctagcccagcccaatcccca
tcagtgcaagctgacccacccttagggcaatctaatcgagagaaacctacaccagagcaa
cctatcccggagcaacccaaaccagagacacccaaaccagcacaacgtaaccctgcccaa
ccacttacagggcatcaaaacccagccacgctcccttcagcgctacccaatcaagcccaa
ccagagcaacccaatccagtgcaccctaacctatcccaaccacctttagaccatctctcc
ctaacccagtcaaaggaccagccaactgaagcccaaccacatccagatcagggtcctcca
acccggttatccacagatcagtcatctccacaacagtcttcaccagatcagccagatccg
tcatctccacaccagtcatcaccagatcagtcatctccaaaccagtcatcaccagatcag
tcatctccacaacagtcatcaccagatcatccagatccgtcatctccacatttgtcatca
ccagatccgtcatttccacaccagtcatcaccagatcagtcatctccacaacagtcatca
ccagatcatccagatccgtcatctccacaccagtcatcaccagatcagtcatatccaaac
cagtcatcaccagatcagtcatctccacaacagtcatctccacaacagttattacctaaa
catccagatcagtcatcacagtcatctccagacgaggacaaacctaagaaaaagggagat
ccaaacaaactttcccttctgacctggaacatagatggcctggacctgaacgatatcaag
gaacgtctctcaaggctactggactacctgatcaagtaccaccccgacattgtgctactg
caagaggttatttcaccaatttaccaggttttacagcaggttctgaagccgtatcatgtg
ttgccaggtagtgacagaagctatttcactgtcatactgctgaggaagtccagagttcaa
cttctggagagtagcatagtgaattatcctaccacagagatgaggagaaatctgcttatg
gcccatgtttctttccttggccatccattgtgtgtgatgacgtcccacatggagagcatg
aagccccgatccctggaacgccagaaccagctgaggacggtgtggaagacaatgagggag
cagccccaggaccacagcgtcatctttgggggagacaccaacctcagggactgggaggtg
aagaaccagggtggtctacccgagaacatctgtgacgtatgggagtccctgggccagccg
gaagactgccggtacacctgggactgtgtcaccaatgacaacaaggacctccctttcccc
gcacgcctgcgcttcgaccgcatcttcctgaggcaggccggcgaggggtcaaaggtcagc
ccagatggcatcaccctggtgggcctggagaggttgaatgactgtcaacgctttaccagt
gaccactggggtctcctctgcaccttcgtcataaaaccactcagtcaagcaacacctgaa
tga
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integrated database retrieval system
