Oncorhynchus tshawytscha (Chinook salmon): 112222900
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Entry
112222900 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: ribosome biogenesis protein BMS1 homolog
KO
K14569
ribosome biogenesis protein BMS1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112222900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
otw03009
]
112222900
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
90S particles
GTPase
112222900
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIBIOP_C
AARP2CN
Tsr1_G-like
GTP_EFTU
MMR_HSR1
AAA_22
AAA
AAA_16
nSTAND3
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
112222900
NCBI-ProteinID:
XP_024241532
LinkDB
All DBs
Position
LG23:complement(13594458..13629650)
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AA seq
1230 aa
AA seq
DB search
MEGKEPKKEQKRHQQKHSGPKAERKKIRKQLGTPAGDDERKRNPKAFAVQSAVRMAKTFH
RAQDLKAKKHHIPLVDRTPLEPPPIVVVVVGPPKVGKSTLIRCLIKNFTRQKLGDICGPV
TIVSGKKRRLTFIECSNDINTMIDLAKVADLVLMFIDASFVFEMETFEFLNICQVHGFPR
IMGVLTHLDSFRNNKALRKTKKRLKHRFWTEVYQGAKLFYLSGMVYGEYQTQEVKNLGRF
ISVMKFRPLVWQQSHPYVVADRMEDLTDPEMVRVDPKCDRTVSLYGYLRGTYLKNKGQVH
IPGVGDFAVADISFMPDPCTLPEAQKKRALNEKERLLYAPMAGVGGVVYDKDAVYIDLPG
GHVNQEQEEVCPTTELVQSLIGTHTTLDAKMAAGKVSLFTGAAALTPGEVEEEEEEEEEN
GTPGEPIWDPETQRERRKAVFTEEEDDDDDDSEGSSDEEGWMRGETKEDEEGESEEEDEG
ETTKEKQGIKTIPPVKRQKMEERKVEKEPVVEVPAFADSDDELEMSEEEEGEGGRESDGE
ESDSEGEEDEEDGAVEKCDLKPIDSGHCSEEDVSDSIEDDCETNVSGKESKKSNATSKME
EEDEEMEGGELCYESAGALRWKEGLQQKASEAFLRQQRAAPNLRKLVYGTVAEDEEELGG
LFXVSRPEKDKKHRADGVDCSRFDPDAARNWDLEEMLDSIRDCFVTGKWEDDQDAATLQK
EDEELYGDFEDLETGAVHKGKAGKQKDQAEEESDDDDDEEEEKLMVDDETQKNKRLEKKR
RLKECFDTEYDDGDATYFDDLKEEMQKQAELNRAEFEEVDDETRVQYEGFRPGMYVRLEI
PSLPCEFVTKFDPHYPIILGALGASEGNVGYLQMRLXKHRWHNRILKTRDPLILSLGWRR
FQTIPLYHIEDHCGRHRLLKYTQHMHCGATIWGPITPQGTGFLAVQSVAGTKTSFRIAAT
GVVLDLDKSVTIVKKLKLIGYPYKIYKNTSFIKGMFNTVLEVVKFEGASIRTVSGVRGQI
KKALSTPAGAYRATFEDRLLMSDIVFLRSWYPVSVPQLYNPVTSLLMPAGQKDNWSGMRT
VGQLKHDLGVRNKPNTDSLYKPVVRVQHHFNKLHIPRELQKALPFKSKPKQDQPKGKTPK
DLQRPAVIREPHERKVAALLNALILVHNYKSKKAHTVQHAKHKDFLRQRSKAEEDKLKRQ
KEAKKKLYRMMGQKEKKSQRSSLKGAPQDD
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaaggagccaaagaaggaacagaagcggcaccagcagaagcacagtgggccc
aaggcggagaggaagaagatcaggaagcagctgggaactcctgccggagatgacgagcgc
aagaggaaccccaaagcgtttgcggtccagtcagcagtgcgcatggccaaaaccttccac
agagcccaggacctaaaggccaagaagcatcacatacccctggtggaccgcaccccttta
gagcctcccccgatagtggtggtggtggtaggaccccccaaggtgggcaagagcaccctc
atccgctgcctgatcaaaaacttcacacggcagaaactaggggacatctgcgggcctgtg
accatcgtctctggaaagaagaggcgtcttaccttcatcgagtgtagcaatgacatcaat
acaatgattgacttggcaaaggttgctgacctggtgctgatgttcattgacgccagcttc
gtctttgagatggagacctttgagttcctcaacatctgccaggtgcacggcttcccgcgc
atcatgggcgtgctcacccacctggactcgttccgcaataacaaggcccttcgcaagacc
aagaagcggctcaagcatcgcttctggactgaggtctaccagggtgccaaactcttctac
ctgtccggtatggtgtacggggagtaccagacccaggaggtcaagaacctgggccgcttc
atctccgtcatgaagttccgcccgctggtgtggcagcaatctcatccctacgtcgtggcc
gaccgcatggaggatttgacggaccctgagatggtgagggtggaccccaagtgtgatcgt
actgtatctctctatggctacctgagagggacatacttgaagaataaaggccaggtccat
atccctggcgtgggtgattttgcggtggcagacatcagtttcatgccagacccctgcact
ctgcctgaagcgcagaagaagagggcgctgaacgagaaggagcggctgctctacgctccc
atggcgggggtcgggggggtcgtgtacgataaggacgcagtgtacatagacctgcccggc
ggccacgtcaatcaagaacaggaggaggtctgtcccaccacagagttggtccaatccctc
atcggtacacacaccaccctggatgccaagatggccgccggcaaagtgtcactattcaca
ggggcggctgccctgacccccggggaagtggaggaggaggaggaggaggaggaggagaac
gggaccccaggagagccgatctgggaccctgagacacagagagagaggaggaaggctgtc
ttcactgaagaggaagatgatgacgatgatgacagcgagggtagcagtgacgaagagggg
tggatgaggggggaaacaaaggaagatgaggaaggagagtctgaagaagaggatgagggg
gaaacaacaaaagagaagcaaggaataaagaccatccctccggtgaagagacagaagatg
gaggaaaggaaagtggagaaagagccagtggtggaggtacctgcctttgcagacagtgac
gatgagctggaaatgagtgaggaggaggaaggagaagggggaagggagagtgatggagag
gaaagtgattcggagggggaagaagatgaagaagacggtgcagtggaaaagtgtgatctc
aaaccaatagactcgggtcattgctcagaggaggatgtgagtgattcaatagaagatgac
tgtgaaaccaatgtctcgggcaaagaaagcaagaagtcaaatgccacctccaaaatggaa
gaggaagatgaggagatggagggaggagagctgtgctatgaaagtgcaggggcactgcgg
tggaaggagggtctgcaacagaaagcgtcggaggcgtttctacggcaacagcgcgccgcc
cccaacctgcgtaaactggtgtacggcacagtggcagaggatgaagaggagctgggaggg
ctgttttgagtcagccgccccgagaaggacaagaagcatcgtgcggacggcgtggactgc
tcccgttttgaccccgatgccgctcgcaattgggacctggaagagatgctggactcgata
cgggactgttttgtgacggggaaatgggaagacgatcaagatgctgctacattgcagaaa
gaggatgaggagctgtatggcgactttgaggacttggagacaggggcagtgcacaagggg
aaagctggcaagcagaaggaccaagctgaggaagaaagtgatgatgatgatgacgaagag
gaggagaagctgatggtggacgacgagacccagaagaacaagcgtctggagaagaaacgg
cggctgaaggagtgtttcgacacggagtacgacgacggagacgccacctactttgacgac
ctcaaggaggagatgcaaaaacaggcagagctgaaccgggctgagtttgaggaagtggat
gatgagacacgggtccagtacgagggcttccggcctggcatgtatgtccgtctggagatc
ccctccctgccctgcgagtttgtcaccaaatttgacccccactatcccatcatcctcggg
gctctaggtgccagcgaggggaatgtaggctacctgcagatgcggttatagaaacatcgg
tggcacaaccgtatcctgaaaacacgcgaccctctcatcctgtccctgggctggcgtcgc
ttccagaccatccccctgtaccacatcgaggaccactgcgggcgccaccgcctgctcaag
tacacgcagcacatgcactgtggtgccaccatctggggtcccatcacacctcagggcact
ggcttcctggctgtgcagtcagtcgcaggaactaagaccagtttccgcatcgcagctaca
ggagttgtccttgacttggacaaatctgtgaccatagttaaaaagctcaagctgattggc
tacccatacaagatctacaagaacacatccttcatcaaggggatgttcaacaccgtgctg
gaggtggtgaaattcgaaggggcttccatccgaactgtcagtggggtcagaggtcaaatt
aagaaggccctgtcaacgccggcgggagcctacagagccacgttcgaagacaggctgctg
atgagtgacattgtgttcctgcgctcctggtacccggtgtcagtccctcagctctacaac
cccgtgacctccctgctgatgccagcgggccagaaggacaattggtcgggcatgaggacg
gtgggccagctgaaacacgacctgggggtccgcaacaagcccaacacagactcactgtac
aagccagttgtgcgagtgcagcaccacttcaacaagctgcacattccccgggagctgcag
aaggcattgcccttcaagagcaagcccaaacaggaccagcccaagggcaagacgcccaag
gacctccagaggcctgctgtcatacgggagccccacgagaggaaggtggcggcactgctc
aacgcgctgatcttagtgcacaactacaagagcaagaaagcgcacacagtgcagcacgct
aagcacaaggacttcctgcggcagcggagcaaggcggaggaggacaagctcaagaggcag
aaggaggcaaagaagaagctttaccgtatgatgggccagaaggagaagaagagtcagagg
tccagtctgaaaggggcgccacaggatgactga
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