Oncorhynchus tshawytscha (Chinook salmon): 112222931
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Entry
112222931 CDS
T05605
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112222931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112222931
03036 Chromosome and associated proteins [BR:
otw03036
]
112222931
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112222931
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112222931
PBAF complex
112222931
GBAF(ncBAF) complex
112222931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT
HEAT_GCN1
BRCT_2
Motif
Other DBs
NCBI-GeneID:
112222931
NCBI-ProteinID:
XP_042160560
LinkDB
All DBs
Position
LG23:complement(12912127..12931993)
Genome browser
AA seq
1108 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPVGVGTAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVHDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPISEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEEEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNPKKDSENTPVKGGAVADLDDLEDDSVVSGGKE
EEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMINFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAARQPKAALEE
FSRVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTAPPSLSVT
VEPAETEKVDTDSDSQQPDKAESKDEAEKPSESAEKLAEGQKVKSETAEPSEREEGESEG
GEGKATADKDKEAAMETSEEDKEKAEQGAMEEEEEERKKLEPDGGEGNIATAAAAALASA
ATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLT
ERQAFHMEQLKYAEMKARQQMEQQQANTVAQSPAPHHGPPGPGMHHGPSHHGPPPAMHSG
HGPPGPGFHPMGPHHPQQTGPMGGPGQPMPGRMMPGGPPTGSMPPMMGPRHPGAPNGMYP
GPSPVQADGMPPASVGPQAAAPARVADS
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggaccagcagccggccct
gtgggcgttggtactgcggtgggccgtaaaaaggatggaggtccttcctcgaaatactgg
gagagcgcagaaaccgtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtccaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcggacggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcagggggtgctctgtgtcacatcctgggc
tctacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggacaggaatgtagagatgttcttgaatgtagagaaaaccctggttcagaataac
tgcctgactcgaccaaccgtattcctggtgcatgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagagacaccagggctccatcactgaggacaagtctaaggccacc
catcatatctacccctctccaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtgcactggggcatgtacccagacagttatgacacctgg
gtgtccaccagtgatgtggaaggggatgtggaggacccacccatctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacacagatgccttcaacgagtggatgaatgaggaa
gactatgaggtggatgagaacaagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgtaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtctcgcaagaagggtggc
aagaaggggaatcctgggtctcactggaagcgtcgtggccaccgtggcgaggaggaggag
gaggaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgcccaagaacgtgaaccctaagaaagatagcgagaacaccccagtgaaggga
ggggcagtggctgacttggatgatctggaggatgactctgtggtctccggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaactgt
atccatgagattgagaggcgtgcactgccagagttcttcaacggcaagaacaagtccaag
tccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacctaaccggagacgtgtgtgccgtc
atgagggtgcatgcgttcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccggcccctccccatgggccccccgcccaccccccacttcaacgtgctggctgacacc
ccctctggcctgacgccgatgcaccaccgccccccacagatcccctccggccagcagatg
atcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcttgcgt
aacgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactggaac
aaggtgtcggagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccctacctggagaactctgagtcgtccctgggccccctggcctac
cagcctgtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctggcc
tccgtggtggatccccgtgtggcctctgccgcaaggcagcccaaggcagccctggaggag
tttagccgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtg
caggaggcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagtggc
atcgcaggaactgcccccgaggagcccgagaagaccgcccctccttctctctctgtcact
gtagagccagcagaaaccgagaaggtggacacagactccgactcccagcagcctgacaag
gctgagtctaaggacgaggcggagaagcccagtgagtctgctgagaagctggccgaggga
cagaaggtgaagagcgagacggccgaaccgtctgaacgggaggagggagagagtgaggga
ggagagggcaaggctacagcagacaaagacaaggaggcggccatggagacctcagaggag
gacaaagagaaggcggagcagggagcgatggaagaggaggaagaggagaggaagaagcta
gagccggacgggggggaggggaacattgccactgcagccgccgctgccctcgcctcagct
gccaccaaggccaagcacctggcggcagtggaggagaggaagatcaagtctctggtggct
ctgctggtggagactcagatgaagaagctggagatcaagctcagacactttgaggagctg
gagaccatcatggaccgagagaaagaggctttggagttgcagaggcagcagctgctgacg
gagcgccaggccttccacatggagcagctgaagtatgctgagatgaaggctcgccagcag
atggagcagcagcaggccaacacagtggcccaaagccccgcaccccaccatggtccccca
gggccaggcatgcaccacggaccctcccaccacggaccccctcccgccatgcactccgga
cacggccctcccggacccgggttccaccccatgggtccccaccacccgcaacagaccgga
ccaatgggagggcccggtcaacccatgccaggacgcatgatgcctggcggcccccccact
ggcagcatgcctcccatgatgggtccccgccaccctggagcccccaacggcatgtaccct
ggcccctcgcctgtacaggctgatggtatgcccccagcatctgtgggacctcaagcggca
gccccagcacgagttgctgacagctaa
DBGET
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