Oncorhynchus tshawytscha (Chinook salmon): 112222934
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Entry
112222934 CDS
T05605
Name
(RefSeq) sterol regulatory element-binding protein cleavage-activating protein isoform X1
KO
K26682
sterol regulatory element-binding protein cleavage-activating protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112222934
Membrane trafficking [BR:
otw04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
112222934
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
WD40
Motif
Other DBs
NCBI-GeneID:
112222934
NCBI-ProteinID:
XP_024241581
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All DBs
Position
LG23:complement(12818365..12855997)
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AA seq
1310 aa
AA seq
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MAMDCIGSSDAFKLGILGSIVRRSLDAPRHSVLARPPDGRQLTPPPRMTVRERLREKISA
AFYRHGLLCASYPVPIILFTSASILACCYPLLRLPLPGTGPVEFTTRVRDYTVPSHEPQG
DLGERPDWYRGPPVAYIQQVLVKAAVSPWDSTLVPVDVFRSPLGRVFSLLEEIRNHVHND
GSGVRSLEALCLQVTDLLPGLRRMQTVLPEHGCLLVSPGNYWQNQRELFDSDPDLLKTVH
QHEPKGLHTSATLRDLLFGVPVKHTGVSLYSRKRVVTYTITMVLGSYDARFLSSLRARLR
QLHPSVNCSLREDHMVHVHFKEEIGMAELIPLVTTYIILFAYIYFSTRKIDMVKSKWGLA
LAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSVVSTPVDLE
VKLRIAQGLSNESWSIMKNMATELCIILIGYFTLVPAIQEFCLFAVVGLVSDFFLQMFFF
TTVLSIDIRRMELADLNRRLPAEAGMPPPKPGPLRPREAPPPPRPSPYTITLQTPAFRNL
RLPKRLRVVYFLARTRLAQRFIMVGTVIWIGILAYTDPAGLRTYLAAQVSEQSPLGEGGA
GGLPPHLGGASVFPGAGGDPASTLSVLPAPAEPTPLPENQSQGHHGAPREGVPHQAQAPP
LVPQISWGAEDEEGWRRLSFRHWPSLFSYYNITLAKRYISILPVIPVTLHLSPREAIETR
HPQDTRHPPPPSLKTNDLPADLTLYKVAALGLAAGVLLVLLLFCLYRVLCPRNYGQNGVA
HGRRRRGDLPCDDYGYSPPISEISPLLLRGHSMDIECLASDGMLLASCCLAGQIRVWDAQ
TGDCLTVIPKHGLRRSSSSGCWEQRDGWDAVGVAEPENLGGGTEPGGGVFDEDEGYPLRR
RTTPRPALFEDQPDLTPLIDTNFDSQPPSHLLLTPPRDGFDFGGLVERAYLEHEPPSPGL
TASYPSPSPPSGPPPQRRRSLGYIQPPVPQGQGTPDWESAVWAMELRGNLIAAGRSSGKL
ELWDAVEGSLRCSNEDGVSGITALAFLNNRIVAARLDGSLDFFTVDINKPLGLLQYRGPP
GRSNIPPSPCYSSEDVISCQLTRSVQCAHQKPITVLRAAAGRVVTGSQDHTVRVYRLEDS
CCLFTLQGHSGGITAIYIDQTMVLASGGQDGAICLWDVLTGSRVSHVYGHRGDVTSLVCT
TSCVISSGLDDLISIWDRSTGIKLYSIQQEVGCGASLGVISESLLVTGGQGCVSFWDLNF
GDLLQTVYLGQSSDGQGVRQLVVLNNAAIVCDFGSELSLVYVPSVLEKLD
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggactgtataggatccagcgatgccttcaaactggggattttaggaagcatc
gttaggaggtccctggatgccccacggcactccgtcctcgctcgccctcccgatggccgg
cagctgaccccgccccccaggatgacggtgagagagcggctgcgagagaagatctcggcg
gcgttttaccgccatgggctgctttgcgcttcctatccggtgcccatcatcctcttcacc
tctgccagtattctcgcctgctgttaccccctgctgcggctgcctctgccggggaccggg
ccggtggagttcaccacacgggtccgagattataccgtcccttcccatgagccccaggga
gacctcggcgagcggcctgactggtatcggggtcctccggtggcctacatccaacaggtc
ctggtgaaggcagctgtgtctccctgggacagtacgctggtccctgtggacgtgttccgc
tccccactgggccgcgtattcagcctgctggaggagatccgcaaccatgtacacaacgac
ggttctggggtcaggagcctggaggcgctctgcctgcaggtgacggacctgttgccgggg
ttacggcgtatgcagacagtgctgccggagcatggttgtctgctggtctcccccggcaac
tactggcagaaccagcgggagctgtttgactctgaccccgacctgctgaagaccgtccac
cagcacgaacccaaaggactgcacacctccgccacactgagagacctgctgtttggcgtc
ccggtgaaacacacaggggtgagtctgtacagcaggaagagggtggtcacctacaccatc
accatggtcctgggcagctacgacgccaggttcctgtctagcctgcgggcacgtctccgc
cagctgcacccctcggtgaactgcagcctacgcgaggaccacatggtgcacgtgcacttc
aaggaggagataggcatggccgagctcatccccctggtcaccacctacatcatacttttt
gcctacatctacttctccacacgtaagattgacatggtgaagtcaaaatggggcttggcg
ctggctgccgtggtaacagtgctcagctctctgcttatgtctgtggggctctgcaccctg
ttcggcctgacgcccacactcaatggaggtgagatcttcccatatctggtggtggtgata
gggctggagaacgtcctggttctcaccaagtctgtggtgtccacccctgttgacttggag
gtcaaactacgcatcgctcagggccttagtaatgagagctggtctatcatgaagaacatg
gccacagagctgtgcatcatcctcataggatatttcaccctggtgcctgctatccaggag
ttctgtctgtttgctgtggtgggcctggtgtctgacttcttccttcagatgtttttcttc
accacagttctttccattgacatccgacgcatggagttggccgatctgaaccgccgtcta
ccggccgaggcggggatgccccctcccaaaccgggccccctgcgccctcgggaggcgcct
cctcccccacggccctcgccctacaccatcaccctgcagacgcccgccttcaggaacctg
cgtctgcccaagaggctccgtgtggtctacttcctggcccgcacacgtctggcccagcgc
ttcatcatggtgggtacagtgatctggattggcatcctggcctacacggaccccgctggc
ctccgtacctacctggcagcccaggtgtctgaacagagccccctgggggagggtggggcc
gggggtctgcccccccacctgggaggagcctcggtcttccctggagcaggaggggaccct
gccagcaccctcagtgtcctccctgcccccgctgaacccaccccacttccagagaaccag
tcccagggtcaccacggggctcccagggaaggagtaccccaccaggcccaggccccaccc
ctggtgccccagatcagctggggggcggaggatgaggagggctggaggaggctgtctttc
agacactggccctcgctcttcagctactataatattactctggccaagagatacatcagc
atcctgcctgtcattcccgtcacgcttcacctgagcccccgggaggccatcgagacgcgt
cacccccaggacacacgccaccccccgccgcccagcctcaaaactaacgacctacccgca
gacctcacgctctacaaggtagcagctctgggcctggcggcaggggttctgctggtgctg
ctgctcttctgtctctaccgggtcctctgtccccgcaactacggccagaacggagtggcc
catggacgccgtcgccgcggtgacctgccctgcgacgactatggctactcgccacccatc
agtgagatctcccccctgctgctgcgtggacacagcatggatatagagtgtctggcgagt
gatggcatgctgttggccagttgttgtctggcaggacagatccgtgtgtgggacgctcag
actggagactgcctcactgtcattcctaaacatgggctgcggcggagtagtagcagtggc
tgctgggaacaacgggatggctgggacgccgtgggtgtggccgaacctgagaatctggga
ggcgggacagaaccagggggcggggttttcgatgaggatgagggctatcccctcaggcgg
cggaccaccccacgcccggcactctttgaggaccaacccgacctcacccccctcatcgac
accaacttcgactcccagcccccctcccacctcctcctcaccccgcccagggatggcttt
gacttcggtgggctggtggagagagcctacctagagcacgagcctccctcgccgggcctc
actgcctcctacccctccccctcccccccatcgggaccccctccccagaggagacgcagc
ctggggtacatccagccccctgttccacagggccagggaaccccggactgggaaagcgcc
gtgtgggccatggagcttcgggggaacctcatcgctgctgggaggagcagcggcaaactg
gagctgtgggatgcagtggagggctcgttacgctgcagtaatgaagacggcgtctcgggg
atcacggccctggccttcctcaacaacaggatcgtggcggccagactcgacggctctcta
gacttcttcactgtcgacatcaacaagcctctgggcttactgcagtacagaggtcctccc
gggcgtagtaacataccgccctcgccctgctacagcagtgaggatgtgatctcatgccag
ctgacgcgctcggtgcagtgtgcccaccagaaacccatcacggtgctgcgagccgctgcc
ggcagagtggtcactggcagccaggatcacacggtcagggtatatcgtctggaggactca
tgctgtctcttcacgctccagggccactctgggggaatcactgccatctacatagaccag
accatggttctggccagtggggggcaggacggagcaatctgtctgtgggatgtgctgacg
ggcagccgggtgagccacgtgtacggtcaccgcggcgacgtgacctcgctggtgtgcacc
acatcgtgcgtgatcagcagcggccttgacgacctcatcagcatctgggaccgcagcacg
ggcatcaagctctactccatacagcaggaggtgggctgtggtgctagtctgggggtcatc
tctgagtctctcctggtgacagggggccagggctgtgtgtccttctgggacctgaacttc
ggggacctcctccagacggtctacctgggccagagcagcgacggccaaggggtccgccag
ctcgtggtgctgaacaacgccgccatcgtctgcgactttggctccgagctcagcctggtc
tatgtaccctcggtgctggagaagctggactga
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