Oncorhynchus tshawytscha (Chinook salmon): 112222936
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Entry
112222936 CDS
T05605
Symbol
sema6e
Name
(RefSeq) sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E isoform X1
KO
K06842
semaphorin 6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
112222936
NCBI-ProteinID:
XP_024241586
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Position
LG23:12618389..12748982
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AA seq
1106 aa
AA seq
DB search
MRLVPGSPRPLPLLAVVLALALTALLPHLTMGVTPFPQDLEPISIGGREHSYLYPSFQGL
MSDNDTVRLGLDFQRMLRINHMLYIAARDHVFAVSLSASSEQIVPQQKLTWKTKDVDKCT
VRGKNSDECYNYIKVLVPRNDETLFACGTNAFNPTCRNYKMSTLEQDGEEVVGQARCPFE
SRQSNVGLFAGGDFYSATMTDFLASDAVIYRSLGESSPVLRTVKYDSKWLREPHFLHAIE
YGNYVYFFFSEIAVEYTTLGKVVFSRVARVCKNDNGGSPRVLERYWTSFLKARLNCSVPG
DSFFYFDVLQSLTNVLQINHRPAVLGVFTTQANSITGSAVCAFYMDDIEKAFNGKFKEQR
NSESAWTPVPEEQVPKPRPGCCAGDGSAAAYKSSTTFPDNTLTFIKNHPLMDEAVPSVNH
RPYFTRTTSRFKLTQLAVDTSAGPYKNHTVLFLGSEDGRVLKILASTQLNASFSTQLLED
IDVYNPTKCNVRGEDRRVLGLELDREHHALFVAFSSCVVRVPLSRCNDYGSCKKSCLSSR
DPYCVWQRTGSCVTVVSRFRGGFEQDVENGYPHYPDSCHDVLATTRKQNTLADSAYGKTT
PTTTASTTNQVAPFPKVAGDPERGTGPDGRPPVPVGDQGSPDSEAISVEMEGVRGPPEME
KTNHSVHYTLLIACVLVAFVLGAFLSGFLVSCYCNHTGHKTKRLAKDPEAPIPHALSLRS
LAKLNGLLECQNKEDKMEVSSPKLYNSFFQNGKEHHQGAPRRNGGHHPGMSMGDQVHPHH
LHHSSELSGLPTPDSTPELPIKNMKAFKNQWEKNQNCNNAKEPKSHNMGQGSRPSSGQLH
QQIYPYSHSFSNGQALANGHALVGGPQHLEERKIHNTERMLVQQPYPCYSQKVMEVTSLD
ELLKHIHEANASKNAQVMTSSGLSASGGCHGGQLAFANRVQPHIPETESAPYYSSSTLPR
DSLSRRMDVPPDMPHHHQSTLERRHSSQRHSLITAATKIANGGGGGGMVHRQQSFSQRNG
HQHQPPPMLARMNSTGSACEIHYPLIPNGYLTRQQSYNGEQQEDTGGYLHRGAIVRRTTS
LKPDVPPKPLFIPASSPVNQQGNFNY
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgaggctggtgcccgggtcgcctcggcccctcccccttctggcggtggtcctggctcta
gccctcacagcactcttacctcacctgaccatgggagtcacacccttcccccaggacctg
gagccaatcagcattggggggagagaacactcctacctgtacccaagcttccagggcctc
atgtcggacaacgatacagtacgactgggcctggacttccagaggatgctccggatcaac
cacatgctctacatcgcagccagggatcatgtgtttgctgtcagtctcagcgcctcctct
gagcagatcgtcccacaacagaaattgacttggaagacaaaggacgtggataaatgcaca
gtgagggggaagaacagcgatgagtgctacaactacatcaaagttctggtcccacgcaat
gacgagaccctatttgcctgcggtaccaacgcctttaaccccacctgccgcaactacaag
atgtccacactggaacaggacggtgaggaggtggtgggtcaggcccgttgtccctttgag
tctcgccaatccaacgtcggcctcttcgctggtggcgatttctactcggccaccatgaca
gacttcctggcgagtgatgcggtaatttaccgtagtctgggagagagcagcccggtgctt
cgtaccgtgaagtacgactccaaatggctacgagagcctcatttcctccatgccattgag
tacgggaactatgtgtacttcttcttcagtgagattgctgtggagtacaccacacttggc
aaggttgtgttctccagagtggctcgtgtatgtaagaacgacaatggaggttctcccagg
gttctagagcgttactggacgtcgttcctcaaagcgcggctcaactgctcggtgccgggc
gattccttcttctactttgacgttctgcagtcgctgaccaacgtgctgcagatcaatcac
agaccagccgtgctgggggtcttcactacacaggccaacagtataacaggctcagcagta
tgtgcattctacatggacgacattgagaaggctttcaacgggaagttcaaggagcagagg
aacagtgagtcagcctggacacccgtgcctgaggagcaggtacccaaacccagaccaggc
tgctgtgccggcgacggctctgctgctgcctacaagtcgtccacgaccttccccgacaac
accctgaccttcatcaagaaccaccccctgatggacgaggctgttccctccgtcaaccac
cggccctacttcacacgcacaaccagcaggttcaagttgacccagctagcagtggatacg
tcagctgggccctataagaaccacacggtgctgttcctggggagcgaggacggcagggta
ctgaagatcctggccagcacgcagctcaacgcctccttcagcacacagctactggaggac
attgatgtctacaaccccaccaaatgtaatgtccgcggagaggacagacgggttctggga
ttggagctggacagggaacatcacgctctgtttgtggccttctccagctgtgtggtccga
gtacctctgagccgctgcaatgactacggctcctgcaagaagagctgtctgtcctcgagg
gacccttactgcgtgtggcagaggactgggagctgtgtcacagtggtgtccagattcagg
ggcggatttgagcaggatgtggagaacggctaccctcactaccccgacagctgccacgac
gtcctggcgaccacacgcaagcaaaacactcttgctgattcagcatatgggaagaccaca
cccacaacaaccgccagcacaaccaatcaggtggccccattccctaaggtggcaggtgac
cctgaaagaggtacaggtcctgatggcagacctccagtcccagttggggaccaggggtca
cctgactcggaagcaatcagtgtggagatggagggtgtccgagggcctcccgagatggag
aagaccaaccacagtgtccactacaccctgctgattgcctgtgtgctggtggcctttgtc
cttggagccttcctctcaggctttctggtctcctgctactgcaaccacactggccacaag
accaagaggctggccaaggacccagaggcccccattcctcacgccctgtccctacgcagc
ctggctaagctcaatggcctgctggaatgccagaacaaggaggataagatggaggtgtcc
tcgcccaagctctacaactccttcttccagaatgggaaggagcatcatcaaggagcaccc
agacggaacggtggtcaccacccagggatgtccatgggagaccaggtccacccccatcac
ctacaccactcttcggagctctcgggtctgcccaccccagactccacccctgaactgccc
atcaagaacatgaaggctttcaagaaccagtgggagaagaaccagaactgcaacaatgcc
aaggagcccaagtcccacaacatgggacaagggtccaggcccagctcaggccagctccac
cagcagatctacccctactctcacagtttctccaatgggcaagctctggccaatgggcat
gccttagtcggtggaccccagcacctggaggaacgcaagatccacaataccgagcgcatg
ttggtccagcagccttacccctgctactcacagaaggtgatggaggtcacgtcgctggat
gagctgctcaaacacatccacgaggccaacgccagcaagaacgcccaggtcatgacctca
tccggcctgtcagccagcggcgggtgccatgggggtcaactagcctttgccaaccgtgtc
cagccgcacatccccgagacggagtctgcgccctactacagctcatccaccctgccccga
gacagcctgtcccgccgcatggacgtacctccagacatgccccatcaccaccagtccacc
ctggagcggagacactcttcccagagacactcactgattaccgctgccactaagattgcc
aacggagggggtggtggagggatggtccaccgacagcaaagcttcagccagcgtaacggc
caccagcaccaaccgccccctatgcttgctcgaatgaactccaccggcagcgcctgcgag
atccactacccgctcatccccaacgggtacctgacacgccagcagagctacaacggagag
caacaggaggataccggaggatacctccaccggggggccatagtccgccggaccacctcc
ctcaaacccgatgtccctcccaaacccctcttcatccctgcctcctctcccgtcaaccaa
cagggaaacttcaactactga
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