Oncorhynchus tshawytscha (Chinook salmon): 112223114
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Entry
112223114 CDS
T05605
Symbol
clstn3
Name
(RefSeq) calsyntenin-3 isoform X1
KO
K22661
calsyntenin 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112223114 (clstn3)
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Cadherin related
112223114 (clstn3)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
112223114
NCBI-ProteinID:
XP_024241847
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Position
LG23:complement(5402141..5440509)
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AA seq
960 aa
AA seq
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MDRMSFLSFLLLCLTSVANGNKANKHKPWIETEYQGIVMENDNTVLLNPPLFALDKDAPL
HYAGEICGFRVHNGPTGSSSVQFEAVVLDRSTGEGLVRSKEPLDCESQREHSFTIQAYDC
GEGPDGANSKKSHKATVHVRVNDVNEFSPVFVERRYEASVPEGRLFDRIVRVEALDADCS
PQYSQICFYDIITPSVPFVIDNDGNIKNTEPLDSKRQRVHTFWVTAFDCGKNRAQADAQV
VVTVKPSCKPGWIGWSKRVEYTPGSGSIPLFPSLHLETCEETVWNIQATVELQTGHIGKG
CDRDSYSDRSVRRLCGAVRGEVDLLPPPSPAANWTSALPTLPSSDSSLVFSFNGSTHVAV
VPDSVAAAVSGDHFTLQLWMRRGGINTQPPTNQARGNHREEETIVCSTVKNGQSNDDSFS
HYSLSVHGCRLSLFYWPDVSAARPVKFLWKLEQVCDSEWHHLSLSVQFPSVTLYVDGVTF
DPALIHDNGVIPNPAPRQRLVIGACWETEDKQKDILNNTIPEGKDTGKYVGGYRGLLSGV
TVRPGSVEPHSVVECLYACREGLDFGDLETLGSGMKVHVNPSQSVLVLEGDDIESFNRAV
QQVTYRNSLRFATPGVRPLKLTTSLRCFNEESCLTLRQLEGYLVVLQPDAPQISLSGVGP
HLARPAPEFEGPRGVPLFPELRIVCSLSHAVNTAAQGMEGGALMSDAVAHTLDGCEVQPL
GEELNPEREELLVDMDALRERGLEIINTTAYIAITGAESISVYEDVLRSVRYRLAKGSAR
FERRFRLSCSEMNGRYTSNELTLEVNFLHSLDSLYHPSHLLASQQQFLHPSHHSGELSGH
TLPNPHRNSVVPGAATVIIMVCVGFLVVMVIMGVFRIRSIHRRGEGARGGSKEDSGQWDD
SALTIIVNPMESYESRMGISADTEGEGEEDEEVVESPDNANDDQRIIIKKEGRDGNPRRY
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatgagttttctctccttcctcctcctttgcttgacttcagttgccaatggc
aacaaagccaataagcacaagccatggatcgagacggagtaccagggtatcgtcatggag
aatgacaacacagttcttctcaacccaccactgttcgccctggataaagatgctccactg
cactatgcaggtgagatctgtggcttccgggtgcacaatgggcccacgggatccagttcg
gtacagtttgaggcggtggttctggaccgctcgacaggggagggcctggtccgctctaaa
gagcccctggactgtgagagccagcgggagcacagcttcaccatccaggcctatgactgt
ggagagggccccgatggagccaacagcaagaagtcccacaaggctacggtgcatgtacgt
gtgaatgatgtaaacgagttctccccagtgttcgtggagcgtcgctatgaggcctccgtc
ccagaaggccgtctgttcgaccgcatcgtgcgcgtcgaggccctcgacgcagactgctcc
ccgcagtacagccagatctgcttctacgacatcatcacccccagtgttccctttgtcatc
gataacgatggtaacattaagaacaccgagccattggattcgaagcgccagcgtgtccac
accttctgggtgacagcgtttgactgtggcaagaaccgtgctcaggccgacgcccaggtc
gtcgtcacggtcaaaccgtcctgcaaacccggctggatcggttggtcgaagcgggtggag
tatacccccgggtcaggcagcattcccctgttccccagtttgcacctggagacctgcgaa
gagactgtgtggaacatccaggccaccgtagagctgcagactggccatattgggaaaggc
tgtgacagggacagctactcagaccgatcagtgcgcagactctgtggtgctgtgagaggt
gaagtggacttactcccgcccccgtccccagcagccaattggacctcagccttgcccacc
ctcccttcttctgattcgtccctggtgttctccttcaatggctccacccatgttgctgtg
gtacccgactctgttgccgcggccgtatccggagaccatttcaccctccagctgtggatg
cgaaggggtgggatcaacacccagcctccgactaatcaggccagaggaaaccacagggag
gaggagactatcgtctgcagtaccgtcaagaatggtcagtcaaatgacgactccttctcc
cactactctctctccgttcacggctgccgtctctctcttttctactggcccgacgtctcc
gctgcgcggcccgtgaagttcctctggaaactggagcaggtgtgtgacagcgagtggcat
cacctgtccctcagtgtccagttcccctctgtgacactgtatgtggatggagtcaccttc
gaccccgccctcatccacgacaacggagtcatacccaaccctgccccacgacagcgactg
gtcattggcgcctgctgggagacagaagataaacagaaggacatccttaacaacaccatc
cctgaagggaaagacacagggaagtatgtgggtggttaccgtggcctgttgtcaggggtg
acggtgcgtccagggagtgtggagccccacagtgtggtggagtgtctgtacgcctgcaga
gaggggctggactttggggacctggagaccttgggctcaggcatgaaggtgcatgtgaac
ccaagtcagtctgtgctggttctggagggtgatgacattgagagcttcaacagggccgtg
caacaggtcacctacaggaactctctccgcttcgccacccctggagtcaggccactcaaa
ctgaccacctctctcaggtgtttcaatgaggagagttgtcttacgctcaggcagttggag
ggctacctggtggtccttcagcctgacgcccctcagatctccctgtctggggtcggcccc
cacctggcccgtcccgcgcctgaattcgagggcccacgtggtgtacccctcttcccagag
ctgaggattgtgtgctccctgtctcatgctgttaacacagccgctcagggcatggaagga
ggagctctgatgtcagacgccgtggcccacactttggacggctgtgaggtccagcccctg
ggggaggagctaaacccagagagggaggagctcctggtggacatggatgccctgagagag
aggggtctggagataatcaacaccactgcttacatcgccatcacaggagctgagtccatc
tccgtgtatgaggatgtccttcggtccgtccgttaccggctggctaaaggatcggcccgc
tttgagaggcggttccgtctgtcctgctccgagatgaatggcagatacaccagcaacgaa
ctcacactggaggtgaacttcctgcactccctggacagtctgtaccacccgtctcacctc
ctggcctcccagcagcagttccttcacccgtctcatcactctggggagctgagcggacac
accctgcctaacccccaccgcaactcagtggtgccaggagcggccacagtcatcattatg
gtgtgcgtgggcttcctggttgtcatggtgatcatgggagtgtttcgaatccgctccatc
caccgccgtggcgagggcgccaggggagggtctaaggaggacagcggccaatgggatgac
tctgctctcaccatcatcgtcaaccccatggagtcctatgagtctcgtatgggcatctca
gctgacactgaaggtgagggggaggaggacgaggaagtggtggagtcgcctgacaacgcc
aacgacgaccagcgaatcatcatcaagaaagagggcagagacggcaacccccgtcgctac
taa
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