Oncorhynchus tshawytscha (Chinook salmon): 112223119
Help
Entry
112223119 CDS
T05605
Symbol
usp5
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 5 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112223119 (usp5)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112223119 (usp5)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112223119 (usp5)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
112223119 (usp5)
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
112223119 (usp5)
Ubiquitin system [BR:
otw04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
112223119 (usp5)
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112223119 (usp5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA_7
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_9
Pox_RNA_pol
Motif
Other DBs
NCBI-GeneID:
112223119
NCBI-ProteinID:
XP_042160415
LinkDB
All DBs
Position
LG23:complement(5320727..5332349)
Genome browser
AA seq
853 aa
AA seq
DB search
MAEVSEVLMSVLSTIRVPRPGDRVHKDECALSFSSPESEGGLYVCMNSFLGFGSQYVDRH
HTRSGQRAYLHISRTRKAPKEDEENSGSGDPPKKKPTRLAIGIEGGFNVEQEQYEEEVKV
VLFPDRQEVAADDLATMPDLVRERVSLAMAGLMSADSVSHALQVQQWDGEVRAESRHAVE
LKQLDNGTKIPPSGWRCEVCDLQENLWMNLSDGRVFCGRRYFDGSGGNNHALLHFQQTGH
PLAVKLGTITPDGADVYSYDEDDMVLDPKLPEHLSHFGIDMMTMEKTEHTMTELEIAVNQ
RVGEWEVIQESGATLRPLSGPGLTGMKNLGNSCYLNSVMQVLFTVPDFQSKYVSNIDKIF
DEAPSDPTQDFKTQVAKLGYGLLSGEYSKPAPDPGEGSEPSSEPRGDQVGIAARMFKALV
GRGHPEFSTNRQQDAQEFLLHFINMVERNCRSGVNPSEAFRFLVEERIVCQQSQKAKYTQ
RVDYILQLPVPMDQATNTEELQEAERRREEADSSGAPPPAPVRACIPFTACMAALSEPET
LTDFWSSAAQAKTTATKTTRFASFPDHMVIQVKKFTFGQDWVPKKLDVSIDVPDTLDLTA
LRGTGQQPGEELLPEVAPPPLMTPDVEVKGILGSHGNEEDDSLYSPLLSPVLDDSTVSQL
CEMGFPLEACRKAVYYTGNTGIDGAMNWVMGHMDDPDFSAPMVLPGTSSAPGTTPTESVS
EEHLATIVSMGFSRDQATRALRATSNVLERAVDWIFSHLDDLESMEVSEGGRSAAESEGS
REPPPGPKVRDGPGKYELFAFISHMGTSTMCGHYVCHIKKDQQWVIFNDQKVCASEKPPK
DLGYLYFYRRVTE
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggtaagcgaggttttgatgtcggtgctgtccacaattcgggttccgaggccc
ggggaccgtgtccacaaagacgaatgcgccttgtcattttcttctccggagagtgaagga
ggcttatatgtgtgcatgaacagtttccttgggttcggcagccagtatgtggatagacac
cacaccaggagcggacagcgggcttacctgcacatctcccggacccgcaaagctccgaag
gaagatgaggagaactctggatccggtgacccacccaagaagaagccaacccgattagcc
ataggtatcgagggagggttcaacgtggagcaggagcagtatgaggaggaagtaaaagtc
gtcctcttccctgatagacaggaagttgcagccgatgacctcgccaccatgccggacctt
gtgagagagcgggtatctctagccatggcagggctgatgtctgcagactcagtgtctcat
gccctgcaggtgcagcagtgggacggcgaggtgcgggcggagtcccggcacgccgtcgaa
ctcaagcagctcgacaacggcaccaagatccctcccagtggttggcggtgtgaggtgtgt
gacctgcaggagaacctgtggatgaacctgtcggacggaagggtgttctgcggtcgcagg
tattttgacggctccggggggaacaaccatgccctcctgcacttccagcagacgggacac
cctctagccgtcaaactgggcaccatcacccccgacggagcagatgtgtactcctatgac
gaggatgatatggtactggatccaaagctccccgaacacctgtcccactttggcatcgac
atgatgaccatggaaaagacggagcatacgatgacagagctggagatagcggtgaaccag
cgtgtgggggagtgggaggtgatccaggagtcaggggccaccctccggcctctgtcaggc
cccggcctcaccggcatgaagaacctgggcaacagctgctacctcaactcggtcatgcaa
gtcctcttcaccgtgcctgacttccagagcaagtacgtctccaacattgacaagatcttc
gatgaagctccaagcgaccccacccaggacttcaaaacccaagtagcaaagctgggctat
ggtctgttgtcgggcgagtattccaaaccagcacctgaccccggagagggctctgaaccc
agctctgaacccagaggtgaccaggttggcatagcggcacgcatgttcaaagcacttgtt
gggcggggccacccagagttctccaccaatcggcaacaagacgcccaggagttcttatta
cacttcattaatatggtggagagaaactgtcgttcgggggtgaacccgtctgaagccttc
cgtttcttagtagaggagaggatcgtgtgtcagcaatcacagaaagcaaagtacacgcag
agggtggactacatcctccagctacctgtgcccatggaccaggccaccaacaccgaggag
ctgcaggaggctgagcgtcggcgcgaggaggcagactcgtcgggagcccctccccccgcg
ccggtgcgcgcctgtatcccgttcacagcgtgcatggcggcgctcagcgaaccggagact
ctcacagacttctggagctccgccgcgcaggccaagaccaccgccaccaagaccacccgc
tttgcctctttccctgaccacatggttatccaggttaagaagttcacttttggacaggac
tgggtccccaagaaactggacgtaagcatcgacgttcccgacacgctggacctgactgca
ctccgtgggaccggccagcagccgggggaggagcttctgccagaggtggccccaccccct
ctcatgacccctgacgtggaggtcaaaggtatcctgggttcccacggcaacgaggaggac
gactcgctctactccccactactgtccccagtcctggacgactccaccgtgtcccagttg
tgtgagatgggattcccactggaggcctgcaggaaggctgtgtactatactgggaatact
ggaatcgacggagccatgaactgggtcatgggccatatggacgacccagatttctccgct
cccatggtgttgccaggcaccagctcggctcccggaaccacgcccacagagagcgtttct
gaggagcacctagcaaccatcgtctccatgggcttcagccgagaccaggccacgcgagca
ctgagggccacgagtaacgtcctagagcgcgccgtggactggatcttctcccacctggat
gatctagagtccatggaagtttcggaggggggccgctcggccgccgagagtgaggggtcc
agggagccccctcctgggcctaaagtccgagacggacctggcaagtatgagctgtttgcc
ttcatcagtcacatgggcacgagcactatgtgcggccactacgtctgccacatcaagaag
gaccaacagtgggttatctttaacgatcagaaagtgtgtgcctcagagaagccgcctaag
gacctgggttacctctacttctaccggagagtcaccgagtga
DBGET
integrated database retrieval system
