Oncorhynchus tshawytscha (Chinook salmon): 112223182
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Entry
112223182 CDS
T05605
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112223182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112223182
03021 Transcription machinery [BR:
otw03021
]
112223182
03036 Chromosome and associated proteins [BR:
otw03036
]
112223182
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
ARID
112223182
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112223182
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112223182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
112223182
NCBI-ProteinID:
XP_024241981
UniProt:
A0A8C8CPK9
LinkDB
All DBs
Position
LG23:complement(1048601..1081814)
Genome browser
AA seq
2336 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDPNEDSILGEKQQENKQSGLERGSPGRGDLQDGADV
GNAGGGGEPEMKNGNGNPSRTINNQNDSIGSEGNNHPGMVHHHGSGFPPPSYGYSQHYGR
APFHQHGGQQSPGMAAAAGPAVQSSNMMDPYQPNSHDHGFSNHQFNNYNPFPNRTPYSGQ
GYGMNPSRNTQAPAAGGQPANVKQQPAGGPTAMAASYNNQRYNMGNPQPTSTPTLNQLLT
SPSSTRVYPNYPSSEYSNQEGASKGPTDTGSSGQYGGGNPGWQQRTHHPPPMSPGSTGQP
LGRSQPPGAMDPMAKMRGQPYVGGSPYSQQPGQGPPPGAQQGHAYPGQGYGPLSSQRYPV
AIQGRTPGAMGGMHYGQQMQSYGQQGPGGYGPPGQGPYYSQQGQASHPGQQQGPYPQAPP
GQQGGQTPYPQQPHPSQTSSSHAQGGPPYPQPHMPPQSQGPQPGPSQGPPQSQPPYSQGP
VQAQTQSGQPPYPQQQGPPSQPPQQASSQVPAGSQPQLSYPPTQGPQQISTQQQQPQTPA
QPPQQPPGHSQQPQVQPASYSQNPPQQQQQQSQQSPYQRFPPPPQQEISQDSFSSQSSAP
PSNQPKSGSEDVSVQGRPSSLPVSPHPTGAKDLSGSIDDLPTGTDGALSPGVSTSGVSSS
QGEQSNLAQSPFSPHTSPHLPGIRGPSPSPAGSPASATTSRTGPLSPATMPGTQMPPRPS
SVQSDGSLHPAMSQSPMAQDRGFMQRNPQMPPYGSPQSASPLSPRQSSGGQMHPGMGSYQ
QQNNSMGGYGPQGGQYGPQGYPRQPGYNNMPNANYPGMGNPMNPGNPMSGQGGLPFAGIP
PGRMPPGQVGVRPYGPNMGPNMPPNMGNMPPQVGSGMCPPPGLNRKAQEAAAVVMQHAAT
NSIHSRMPGYPNMPPGMMGPGAPYGPPMNNMPGMMNAQGGSPFPMGPNMANNSSGLAPSP
EFGMDGKMNQGQKMNNKVDGTPKAEPTKSKKSSSSTTTNEKITRLYELGPELERKMWVDR
YLGFIEEKAMGMTNLPAVGRKPLDLFRLYVSVKEIGGFAQVSVNKNKKWRELSTNLNVGT
SSSAASSLKKQYIQCLYAFECKIERGEDPPPEIITDNKKANQAKVQPPSPAGSGSLQGPQ
TPQSTSSSMAEGSDLKPPTPASTPHPTQMPPGARSNVALQDPFADGSDPTFPRRNSMTSN
SGYQSGMSTPEMPGRMGPGPYEGPGPNKDPFGAMRKVGEQFLPASQGPNSGMAEQQQFNR
GPPPGAMGNMSMAQRQQYGPGPYGQGYERRPEQGMGPEGSMGSGAPQPNLMPANADTGMY
SPNRYPSQQQPRNDSYGNQYPGHGTPPGGSYPNQQPGMYPQQQQNYKRPVEGGYPPAKRH
EGEMYSGPFSAGLQQQQPQQQPGAASAPPAGQPEMYQPQYSSGSFPGTDRRLPGPQGQFP
FPFNRERMQATTGPNAQPSMPPQMMQPSPDGPQGGAWQGRGEMNYPGNYPNRQGGPPGGS
AQGPGHPGMNRGSEDIMSSEQRMNHEGQWGPGQMGPRQPPYVPGGTAPPMTRTLQSNYQS
AQAMQNHIPQVSSPSPMPRGGPMESRTSPSKSPYMHSGVKMQKAGPPVPASHIVPQSVQS
PLIRRDMPFPPGSVEATHPILKPRRRLTTKDIGTPEAWRVMMSLKSGLLAESTWALDTIN
ILLYDDNSISTFNLNLLPGLLELVVEYFRRCLIEIFGILREYEVGDPGQRTLLDPDALDR
DWSCTEDEESGVEDIEGEEDDDDEEEEVVVQRSKQPAGTTIEGQAPVKQEDEQESCSEQD
TLKEKDAEDEEKSFSNFEQPSSSSDPPALGPATPQERPKQASKFDKLPLKMVRKKDPFPA
GRASQRGKVQEFDSGLLHWSAGGGDSTEHIQTHFERREEFLVPRERVLVIPTAKRKRLET
EMVGDKDNATPTEKDKQKGGGDQRPSQPSSTEKASTTNDTSADGKEGKSEHSDAETEETS
QTEEPQSQQENDKPSGPPYQQVPQRVVEDEPHSKDEGPLLTLANWQDALARRCVCVSNIV
RSLSFVPGNDQEMSKHPGLMLLLGRLVLLHHRHPERKQAPLTYEKEEESDDCLGQRDEWW
WDCLSLLRENCLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPSAEAQDPFPTLGPH
SAMSPQRLVLETLSKLSIQDNNVDLVLATPPLGRLEKLYGTLVRLVGERKVAVCREMSVV
LLANLAQGDSMAARAIAVQKGSVGNLLGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSND
MMRRAARALHALAKVEENHSEFTLYESRLLDLSVSPLMNSVVSHVICDVLFLIGQS
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactctcaacacaagcccgccttccgaactaaag
aagccggatcgagacccaaatgaggattctatactgggggaaaagcagcaggaaaacaag
cagtcgggattagagcgcggatctccgggccggggggatctgcaggacggggccgatgtt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaacgggaacccgtccagg
actattaataatcagaatgattccatcggatccgaggggaataaccatcccgggatggta
caccaccatgggtccggttttcctccaccttcttatggatacagtcaacactacggccgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcaggtcca
gccgtgcagtcgagcaatatgatggacccatatcaacccaattcgcacgaccatggcttt
tctaaccaccagtttaacaattacaatccattcccgaacagaactccctattctggccaa
ggatacggcatgaacccctcgcgtaatacccaggctccggctgctgggggacagccagct
aacgttaagcagcaaccagcaggaggacccacagcaatggctgcatcttacaacaatcag
agatataatatggggaatccacagccaacatctaccccaaccctcaaccagctcctaacc
tctccgagctccacgcgggtatatccaaattacccatctagtgaatatagtaatcaggaa
ggagctagtaagggaccaacagacacgggcagtagcggtcagtatggaggggggaatccg
ggttggcaacaaaggacccatcatccgccgcctatgagccctggaagtacagggcaaccc
ctaggtagaagccagcccccaggtgcaatggatccgatggctaaaatgagaggccagccg
tatgttgggggcagtccatactcccaacagcctgggcaggggcctcccccaggagcccag
cagggtcatgcatacccgggccaaggctacggtccacttagctcccagagatacccggtg
gccattcagggccgcacccctggggctatgggaggcatgcattatgggcagcagatgcaa
tcttatggacagcagggaccaggaggctatgggcctccgggccaagggccctactacagc
caacagggccaggcttcacacccaggccagcagcaagggccctacccccaggcacctcca
ggacagcagggtggtcaaacaccctaccctcagcagccccacccttcccagacgtcatcc
tcccatgcccagggtgggccaccctatccgcagccccatatgcccccccagtcccagggc
ccgcagccaggtccatcccaagggcccccacagtctcaacctccctactcccagggccct
gtccaggctcagacccagtctggtcagcctccttacccccagcagcaggggcctcccagc
cagccaccacagcaggccagctcccaggtcccagcagggtcgcagccccagcttagctat
ccacccacgcagggcccacagcagatctccacacagcagcagcaaccccagacacccgct
caaccccctcagcaaccaccaggtcacagccagcaaccacaggtccagcctgcatcctac
tcccagaatcctccacagcaacaacagcaacagtcacagcagtcaccttaccaacgcttc
cctcctccaccacagcaggagatatcccaggactcatttagttcccagtctagcgcccct
ccctccaaccagcccaaaagtggctcggaggacgtcagcgtacaaggccggccgtccagc
ctaccggtgagtcctcacccaaccggtgcaaaggatctctcaggctccatcgatgacctg
cccacgggcacggatggcgctctgagtcctggcgtgagcacttcaggtgtgtcaagcagc
cagggtgagcagagcaacctggcccagtcgcccttctcgccccacacctctccccatctg
ccaggcatccgagggccctcgccgtcgcccgccggctcccctgccagtgccaccacctcc
cgcacgggacccctctcacccgccacaatgccagggacccagatgccccctagaccatcg
agtgttcagtctgacgggagtctgcaccccgccatgagccagtctcccatggcccaggac
agagggttcatgcagagaaacccccagatgcccccctacggctcaccacagtctgcctct
cccctgtcaccccgacagtcctctggaggccagatgcaccctgggatgggatcttatcag
cagcagaacaactccatggggggctacggacctcagggtgggcagtatggcccacaaggt
tatccccggcaacctggatacaacaacatgcccaatgccaactaccctggcatgggcaac
cccatgaaccctggcaaccccatgtctgggcaaggggggctgccatttgcaggcatcccc
cctggtagaatgcctccgggccaggtgggagtgcgtccctatggccccaacatggggccc
aacatgccacccaacatgggtaacatgccacctcaggtgggctcagggatgtgccctccc
cccggcctcaaccggaaggcccaggaggctgcagctgtagtcatgcaacacgctgctacc
aactccatacacagcaggatgcctggctaccccaacatgccccctggcatgatgggccct
ggcgccccctatggccctcccatgaacaacatgcctggcatgatgaacgcgcagggcggc
tcgcctttccctatggggcccaacatggccaataactccagtggtttggccccaagtcca
gagtttggtatggatggaaaaatgaaccagggccagaagatgaacaacaaagtggacgga
acaccgaaagcggaaccgactaaatccaagaagtcgagctcttccacgacaaccaacgag
aagatcacccgtctgtacgagttgggccccgagctcgagaggaagatgtgggtggaccgc
tacctgggctttatcgaggaaaaagccatgggcatgaccaacctgcctgctgtgggccgc
aaacccctagacctcttcagactctacgtctcggtcaaggagattggaggcttcgcacag
gtcagtgtgaacaagaacaagaagtggcgtgagctgtccaccaacctgaacgttggcacg
tcaagcagcgccgccagctccctgaagaagcagtacatccagtgtctgtacgcctttgag
tgcaagattgaacgcggggaggacccccctcctgagatcatcactgacaacaagaaggcc
aaccaggccaaggtccagccaccctccccagctggatcaggttctctccagggccctcaa
accccccagtccaccagcagctctatggccgagggcagcgacctcaagccccccacacct
gcctccaccccacaccccacccagatgccacccggggccaggagcaatgtggccctgcag
gacccatttgctgacggtagtgaccctactttccccagaaggaactccatgacctctaac
tctggctaccagtctggcatgagcaccccagagatgccaggtcgcatgggtccagggccc
tatgagggtccagggcctaacaaagacccctttggtgccatgcggaaagttggggagcag
ttcttgcctgccagtcagggtcctaacagtgggatggctgagcagcaacaatttaaccgt
gggcctccaccaggtgctatggggaacatgtcgatggctcagagacagcagtatggacca
ggcccttacggacaaggctacgagaggaggccagagcaggggatgggcccagagggcagc
atgggatctggtgcaccgcagccaaacctgatgcccgctaacgccgacacagggatgtac
tcgccaaaccgctacccatcacagcagcagccacggaatgattcctatggtaatcaatat
cctggccatggtactccccctggtggttcctatcccaatcaacagccaggaatgtaccca
cagcaacaacagaactacaagcgtcctgtggaagggggctacccaccagcgaagcgacac
gagggggagatgtacagcgggcccttcagtgcagggctgcagcagcaacaaccgcagcag
cagccaggggcggcctctgcaccccctgctggccagccagagatgtaccaaccacagtac
agcagcggctccttccccggcactgaccgccgcctgcctggtccccagggccagttcccc
ttccccttcaacagagagcgcatgcaggccaccactgggcccaacgcccagccctccatg
cctcctcagatgatgcagccaagccctgacggcccccagggtggcgcgtggcagggccgc
ggggagatgaactatcctggcaattaccccaaccggcagggtggccccccagggggctca
gcccagggacccggacaccccggcatgaaccgcggttcggaggacattatgtcatcggag
caacgcatgaaccacgagggccaatgggggccaggtcagatgggtcctcggcagcccccc
tacgttcctggagggacggccccgcccatgacccgcaccctgcagtccaactaccaatcc
gctcaggccatgcagaaccacattccacaggtgtccagtccttcccccatgccccgtggg
ggccccatggagagccggacatcgcccagtaaatctccctacatgcacagtggcgtcaag
atgcaaaaggcagggcccccggtccctgcctctcacatagtgccccagtctgtacagtcc
cctctgatccgtagagatatgccctttcccccaggctcagtggaggccacccaccctatc
ctaaaaccacgccgacgcctcaccacgaaagatatcgggaccccagaggcttggagggtg
atgatgtccctcaagtctggactgttggctgagagcacgtgggccctcgacaccatcaac
atcctcctgtatgacgacaacagcatctccaccttcaacctcaatttgctgcctggcctg
ctggagctggtggtggagtacttccggcgctgcctcatcgagatcttcggcatcctgcgc
gagtacgaggtgggcgaccccggccagaggactctactggaccctgacgccctggacaga
gactggagctgcacggaagatgaggaatcaggggtggaggacatagagggagaggaggat
gacgacgatgaggaagaagaggtggtggtgcaacgttcaaaacagccggccgggacgaca
atcgagggacaggctccggtgaagcaagaggatgagcaggagtcgtgctcagaacaggac
actctgaaagagaaggacgctgaagatgaggagaagagcttctctaactttgagcagccc
agctcttcatcggacccccctgccctgggcccggctaccccccaggagagacccaaacag
gctagcaagttcgacaagctccccttgaagatggtacggaagaaggacccgtttccggca
ggcagggcaagccagagaggaaaagtgcaggagtttgacagtgggctgctccactggagc
gccggcgggggagacagcacagaacacatccagacccactttgagaggagggaggaattt
ctggtcccacgagaacgagtgctggtcatcccaacagccaagaggaaaaggctagaaaca
gagatggtgggggacaaggacaatgctacccccacagagaaagataagcagaaaggtggg
ggagatcagaggccctcccagccatcatccacagagaaggcctcaacaacaaacgacacc
tcagccgacggtaaggaggggaagtccgagcactcggacgctgagacagaggaaacgtca
cagacggaagagccccagagccagcaggagaacgacaaaccgagcggccctccttatcaa
caagtcccccagcgtgtggtggaggacgagcctcacagcaaggacgagggcccactactt
acactggccaactggcaggacgctctagcccgccgctgcgtctgcgtctccaacatcgtg
cgcagcctctccttcgtgcctggcaatgaccaggagatgtccaaacaccctggcctcatg
ctgctgctgggtcgcctagtgctgctgcaccaccgccaccctgagaggaagcaggccccg
ctcacctacgagaaggaggaggagtctgatgactgccttggccagagggacgaatggtgg
tgggactgcctgtcgctgttgagggagaactgcctggtcactcttgccaacatctctggc
cagctggacctctccatctaccccgagagcatctgccttccgctgctggacggcctcctc
cactgggccgtgtgcccttcggctgaggcccaggaccccttccccacgttggggccccac
agcgcaatgtcaccccagagactggtcctggagactctcagcaagctgagcatccaagac
aacaatgtggacctggtactagccacgccgccgttgggtcggttagagaagctgtatggg
accttggtgcggctggttggggagagaaaggtggccgtctgcagggagatgtcggtggtg
ttgttggccaacctggcccagggagacagcatggcagcgcgcgccattgccgtgcagaag
ggaagcgtgggtaacctcctgggcttcttggaggacagcctggcggccacccagctacag
cagagccagagctctctgctgcacctgcaggggatgcactttgagcccaccagtaatgac
atgatgcggcgggcagcccgggccctgcacgccttggccaaggtggaggagaaccactca
gagttcacactctacgagtcacgcctccttgacctctcagtgtcacctctcatgaactcg
gtggtgtctcacgtcatctgcgatgtactctttctgattggccagtcatga
DBGET
integrated database retrieval system
