Oncorhynchus tshawytscha (Chinook salmon): 112223185
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Entry
112223185 CDS
T05605
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K03145
transcription elongation factor S-II
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112223185
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112223185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIS_M
Zn_ribbon_TFIIS
Med26
HVO_0758
Motif
Other DBs
NCBI-GeneID:
112223185
NCBI-ProteinID:
XP_024241991
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Position
LG23:complement(988030..1011339)
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AA seq
796 aa
AA seq
DB search
MTREEELIRIAKKLDKMVSRNNTEGALDLLNELKSFNMTLKLLQETRIGMSVNGIRKHCT
DDEVVSLAKILIKDWKRLLDAARTQSTERPNKMKNGVDSNKSTGSPVRSPLEKDTSHKRL
DVSDSEPESEKKEYSDKRLKEKYNVEHKKDERAVDLKKERYTEAFKNKRHAEQSKNGKHT
EDARKERHVEHLEEPKKERHFEKSRKERHVPIHDTKNERHVQEPKKESNLEEPKNESHTD
ELRKERHTDERRKEIPMYEPPQERPVENHRQGFERRSVLDDLYPSCYSPPRPPRPPRLPP
PVRRMSGEVNKGVKKEVKKERERRDSSDTLSPSHPRPTPPSRRPSVKVKKERKKAPPDPN
SPLPPLHPHPSMPTAAEVKKESNLQAVMKKKEPPRISVVRKEPPDPNAPFAPLPLHLHPP
PHVKRPSVEVKKEREESSDYKPVSLKVTSSDHVKKDRKDSDSKVPKKTSVDAKKERKDLS
DSKPKPAKRQSLDSSDSNPKRSKRQSLDSSDSNPKRSKRPSLDGKKDRKDSTDSKPSHSV
KRHSTDSKSDRRDSVDSKTSNSPSAKKLSSETKEFHSAKSSHPGPLQRKSSTDSIERRGK
PEMPKIPTTPTSPMSPSFSSAGVPLSPCLATGETIRDKCIEMLAAALRTDDNFKEFGTNC
DSMAAEIEDHIYTEMGSTDMKYKNRVRSRISNLKDPKNPGLRRNVLAGGIELRRFAIMSA
EEMASDELKQLRNNLTKEAIREHQLSKTSGTISDLFQCSKCGKKNCTYNQMQTRSADEPM
TTFVLCNECGNRWKFC
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgagaagaggagttaattcggattgcaaaaaagctggacaagatggtgtctaga
aataacacggagggtgccctggacctgctgaatgaactgaagagcttcaacatgacactg
aaacttctgcaggaaacgagaatcggcatgtctgtgaatggaatcaggaagcactgcaca
gacgacgaggtagtttccctggccaagatcctcatcaaggactggaagagactgctggat
gctgcacgtactcagagtactgagaggcccaataagatgaagaatggggttgactccaac
aaatccacagggtccccagtcaggtcccccttagagaaagacaccagtcacaagaggctg
gatgtttctgattcagaacctgaatctgaaaagaaagaatactctgacaaacggctaaaa
gagaagtacaatgttgaacacaaaaaagacgagagagctgttgaccttaaaaaggagcga
tatacagaggcattcaaaaacaaacggcatgcagaacaatccaaaaacggaaaacataca
gaagatgccagaaaagaaagacatgtagaacacttagaagaacccaaaaaggagagacac
ttcgaaaaatccagaaaagaaagacatgtacctatacatgacacaaaaaatgaaagacat
gtgcaagaacccaagaaagaaagtaacctcgaagaacccaaaaacgagagccacacagat
gaactgagaaaggaaagacacacagatgaacgcagaaaggagataccaatgtacgaaccc
ccacaagagagacctgttgaaaaccacagacaagggtttgagaggagaagcgtcttggat
gatctttacccctcttgttactctcctcctcgccccccccgaccaccccgtcttcctccc
cctgtcagacgtatgtctggggaggtgaataaaggggtgaaaaaagaggtgaagaaggag
agagagaggagagattcttcagacactctgtctccttctcatcctcgtcccacccctcca
tccagacgtccctcagtgaaggtgaagaaagagaggaaaaaagctcctcctgaccctaat
tccccgcttcctcctcttcatcctcatccttctatgcccactgcagcagaggtcaagaag
gagagcaacctgcaagcagtgatgaaaaaaaaagagcctccgcggatttctgtggttaga
aaagagcctccggaccccaatgctccatttgctcctcttcctctccatctccatcctccc
cctcacgtgaagcgcccatcagtggaagtcaaaaaggagagagaagagtcgtcagattac
aaacccgtttctctgaaggtgacgtcatctgaccatgtgaaaaaggatagaaaagactcc
gatagcaaagtgcccaaaaaaacatctgttgatgccaagaaagaaagaaaggatttgtca
gattccaaaccaaaacctgctaaaaggcagagtctggactcgtcagattccaatccaaaa
cgttctaaaaggcagagtctggactcctcagattccaatccaaaacgttctaaaaggcca
agtctggatggcaagaaagacagaaaggactccactgactccaagcccagccattctgtg
aaacgtcattcgactgattccaaatcagacaggagggactctgtggattccaagactagc
aactcaccctcagctaagaagctctctagcgagacgaaagaatttcatagcgccaagtcc
tctcaccctggtcctttgcagagaaagtcctcaacggacagtattgaacggagagggaaa
ccagagatgccaaagattcccaccacccccaccagtcccatgtccccctccttcagctca
gcaggggttcccctgtccccttgccttgccactggagaaaccatcagggacaagtgcatc
gagatgctggctgctgctctacgtacagatgacaacttcaaagaatttgggacaaactgt
gactccatggcagcagagattgaagatcatatttacacggagatgggatccacagatatg
aagtataaaaacagggtgcggagccgcatcagcaacctgaaggaccccaaaaaccctgga
ctgcggaggaacgtcctggctggaggcatcgagctgagacgcttcgccatcatgtctgct
gaggagatggctagtgatgagctgaagcagctgaggaacaatctgactaaggaggccatt
agggaacaccaactgtccaaaaccagcggtaccatttctgacctgtttcagtgcagcaag
tgcggcaaaaagaactgcacctacaaccagatgcagacccgcagcgctgatgagcctatg
actacttttgttttgtgtaacgagtgcgggaaccgctggaagttctgctga
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