Oncorhynchus tshawytscha (Chinook salmon): 112223385
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Entry
112223385 CDS
T05605
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112223385
Spliceosome [BR:
otw03041
]
Common components
Common spliceosomal components
General mRNP proteins
112223385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
PRP38_assoc
RBD_DEAH11
RRM_7
RSRP
Motif
Other DBs
NCBI-GeneID:
112223385
NCBI-ProteinID:
XP_024242149
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MADDFDIEAMLEAPYRKDEIKPSSPNGHEERSKKKKKSRSRSKDRKRSKSRDRKKSHDHK
RSRSRERKRSRSKERRRSRSRSRERSGRYRDHKTTFSGPKFNGGSRGKIGPPPVIKLSRR
RSRSRSPFKKEKSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVR
MISDRNSRRSKGIAYIEFVEANSVPLAIGLSGQRLLGVPIIVQASQVMAEKNRAAAMANN
LQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDA
ECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDSDELERTGIDLGTTGRLQLMA
RLAEGTGLQIPPAAQQALQMSGAIAIGAMAAVSAAMNPAMNMNMNMNMNTAMNLPSQPLA
THCFQLSNMFNPQSEDDPGWDVDIQHDVIEECNKHGGVVHIYVDKNSTEGNVYVKCPTIP
AAMAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSVTATQLLIPPARR
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgactttgatatagaagcaatgcttgaggctccgtatagaaaggatgagatc
aagcccagtagtcccaatggccatgaggagcgcagcaagaagaaaaagaagagcaggagc
cgaagcaaagaccggaagagaagcaagagccgtgatcgcaagaagagccatgaccacaag
aggagccgcagccgtgagcgaaagcggagccgcagtaaggagaggcgccggagccgctct
cggagcagagagcgcagcggccgctacagggaccacaagactaccttctctgggccgaaa
tttaacggtggttccagagggaagattggccctccacctgtcatcaagctaagccgaagg
cgttccagaagccgaagccctttcaagaaagagaagagtcctgtgaggcagccaattgac
aacctgactccagaggaaagggatgctcgcactgtgttttgcatgcagctggcagccaga
atccgtccacgagacctggaagagttcttctctgcagtgggaaaagtgagagatgtgcgc
atgatctctgacagaaattcgaggaggtcgaagggaatagcttacattgagtttgtggag
gccaactctgtgccgctggctataggattgtctggtcagcgacttctgggggtgccaatc
attgttcaggcctcgcaggtaatggctgaaaaaaacagggctgctgccatggccaacaac
ctgcagaagggcaacgctggcccgatgaggctctacgtcggatccttacactttaacatc
acagaggagatgctgagaggaatttttgagccttttggaaggattgagagtattcagctc
atgatggacagtgagactggaagatctaaaggatatggcttcatcactttctcggacgca
gagtgtgccaagaaggcactggagcagttgaacgggtttgagctggcaggccggcccatg
aaggtgggccatgtcacggagcgcacagatgcctccaccgccagttcattcctggacagc
gacgagctggagaggacgggcattgacctaggcaccaccgggcgcctgcagctcatggcc
agactggctgaaggcacgggactgcaaattcctccagccgcacagcaagccctacagatg
agtggggccattgctattggtgccatggctgctgtatcagctgccatgaatcctgctatg
aacatgaacatgaatatgaacatgaatacagctatgaacttgccatcccagccacttgct
acacactgttttcagctgtctaacatgttcaaccctcagtctgaagatgacccaggctgg
gatgttgacattcagcatgatgtcattgaggaatgcaacaaacatggaggagttgtgcac
atatacgtcgataagaattccactgaaggcaacgtgtatgtgaaatgtccaaccattcct
gctgccatggctgcagtaaacgcattacatggtcgatattttgcaggtaaaatgatcaca
gcggcatacgtccctctcccgacatatcacaacctttttcctgattctgtgactgctacc
cagctcctgatccctcctgctcgccgatga
DBGET
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