Oncorhynchus tshawytscha (Chinook salmon): 112223529
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Entry
112223529 CDS
T05605
Name
(RefSeq) RNA-binding protein with serine-rich domain 1-like isoform X2
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112223529
03015 mRNA surveillance pathway
112223529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112223529
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112223529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_5
RRM_7
Nup35_RRM_2
KdpD
PI3K_1B_p101
Motif
Other DBs
NCBI-GeneID:
112223529
NCBI-ProteinID:
XP_024242364
LinkDB
All DBs
Position
LG24:17415291..17420447
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AA seq
277 aa
AA seq
DB search
MAPSPVRRKEHMDDKAKERGKEKTGATKEKPEKDRGREKEKGRKRRSSTGSSRSSSSSSS
GSSSGSSSGSSSSASSRSGSSSSRSSSSTSSGSPSRRRHDNHRRSRSKSKSSLKKDDKER
RKRSPSPRPTKVYLGRLTRNVVKEHIQEIFSSYGKIKMIDMPVDRLRSHLSKGCAYVEFE
NADEAEKALKHMDGGQIDGQEITATAVLAPRVIRPPPRRPSPPRRMPPPPPMWRRTPPRL
RRRSRSPRRRSPVRRRTRSRSPGRRRHRSRSSSNSSR
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcgccttctccagtgaggaggaaggagcatatggatgacaaggcaaaagagcgaggg
aaggagaaaacgggtgccaccaaggagaaacctgagaaggacaggggcagggagaaggag
aagggacgcaagcgacgtagctccactgggagcagcaggtccagctccagtagcagctct
ggctccagctccggttcttccagcggctccagttcctctgcctcaagccgctccgggtct
tccagctcccgatcttctagctcaaccagctccgggtcgcccagtcgccgccgccacgac
aaccaccgccgctcacggtccaaatccaagtcatcactgaaaaaggatgacaaggagagg
cgtaagaggagccccagcccccgaccaaccaaggtgtacctgggccgcctcaccagaaac
gttgtcaaggaacacatccaggagatcttcagctcctatggcaaaatcaagatgattgac
atgcctgtggacaggctccgctcacacctgtcaaagggttgcgcctacgtggagtttgag
aatgccgatgaggccgagaaggctctaaaacacatggatggaggtcagattgacggacag
gagatcacagccactgccgtgctggctcctagggtaatacgcccgccccctcgcaggccc
tccccccctcgcaggatgcccccaccacccccgatgtggcgacgcacccctccacgcctg
aggagaaggtctcggtcaccacggagacgctctccggttcgccgcaggactcgttcgcgc
tcacccggtcgcagacgccaccgctcacgctccagctccaattcctcccggtag
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