Oncorhynchus tshawytscha (Chinook salmon): 112223636
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Entry
112223636 CDS
T05605
Name
(RefSeq) non-muscle caldesmon isoform X1
KO
K12327
caldesmon
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
112223636
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112223636
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
112223636
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caldesmon
Motif
Other DBs
NCBI-GeneID:
112223636
NCBI-ProteinID:
XP_024242537
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Position
LG01:14489910..14534632
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AA seq
606 aa
AA seq
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MSHAILRRNSSKQGLQNLLKITTQRSVEDAEEVERERRRRARESFRSMGSSSTLGPGGPS
LDNGALAEDGLYERDLKPSSSSPSMEEDEGFSDWTQRLERRRQQAQRMEELSQATEEQDQ
RPLNGAAKPPTPHTLSGSATPTTSTSRQQRHKAEVEDEEEKKWGRKESERKGREQEEEVV
REEREREEEAEKQRQEQIRVLKKREEDQRSDAGEKVKEKRKEVKVSYTSKVVLHTEAKHG
NVNGDTAGEKVTSYMVKTKLRAPRAVVQMAAAEAEEEAILETEAKLEKIRRSHAEKEIQE
LEQLKHKQAEAEQELEELKRRREERRQVRKEEERRSREEEQQRLAKEEEEKRRMKEDIER
RRMEAAERMKSLSTSSVDGDEMFSSLSPKGSIYKEPACYANAVEAKITERTESLNRSLKK
SNSFKKTQPPVLLAKIDDRLEQYTTAIEYSQEVKATKQGLTDIPMSPEPVSSKKNLFEAG
EAWNQSLAKGTPPKQDAESLKVGVADMITQWVKGNPDGTSRSSPSRPADVKAGDVMQKKN
MWEIIGETSPGISGAVAKGNASGKKYKFVMTAHGKYEKIPVDDDDDDDENMDEYTNGKAD
LYHGEY
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgctatcctgagaagaaactccagcaagcaaggtttgcagaacctcttgaaa
ataaccacccagaggagcgtggaggatgcagaggaggtggagcgagagcgtcggcggagg
gcccgggaatccttccgcagtatgggcagcagcagtaccttgggccctggaggcccctca
ctggacaatggggccttggcggaggatggcctgtatgagagggatctgaagcccagcagc
agctctccctctatggaggaggacgagggcttcagtgactggacccagcggctggagaga
cgcaggcagcaggcccagcgcatggaggagctcagtcaggccacagaggagcaggaccag
aggcccctgaatggtgccgcaaagccccccacaccacataccctctctggctcagccacc
cccaccacatccacctctcgccagcagagacacaaggcagaagtggaggatgaagaggag
aagaagtggggaagaaaggaaagtgagaggaaagggagggagcaagaggaggaggtggtt
agagaagagagggaaagagaagaggaggcagagaaacagaggcaggagcagatcagagtg
ctgaagaagagagaggaggaccaaagatctgatgctggggagaaggtgaaagagaagcgc
aaagaggtgaaggtctcatacacatccaaagtcgtcctccatacagaggcaaagcatggc
aatgtcaacggagacacagctggggagaaagtgacatcatacatggtcaaaaccaaatta
agggctcccagggcagtggtacaaatggcagctgcagaggctgaggaggaggccatcttg
gagacagaggccaagctggagaagatccgacggagccatgcggagaaggaaatccaggag
cttgagcagctcaaacacaagcaggctgaggccgagcaggagctagaggagctgaagagg
aggagggaggagagacgccaggtcaggaaggaggaggagcgcaggagcagagaggaggag
caacagcgtctagccaaagaggaggaggagaagaggaggatgaaggaggacatagagagg
aggaggatggaggcagcagagcggatgaagagcctcagtacctccagcgtagacggagat
gagatgtttagctcgctcagtcccaaaggctccatctacaaggagcctgcctgttacgcg
aatgcagttgaagccaagatcacagagcgaacggaatccttgaaccgatccctaaagaaa
agcaacagcttcaagaagacacagccccctgttctcctcgccaagatcgatgacaggctg
gagcaatacaccaccgccatcgagtactcccaggaggtcaaggcaaccaaacagggcctg
acggacatccccatgtcacctgagccagtgtcctccaagaagaacttgtttgaggctgga
gaggcctggaaccagagcctggccaaaggcacaccacccaagcaggatgctgagagtctg
aaggtgggcgtggcggacatgatcacccagtgggtgaaggggaacccagatggcaccagc
aggagctccccctcaagaccagctgatgtaaaagctggtgacgtgatgcagaaaaagaac
atgtgggagatcattggagaaacatcccctgggatttcaggagcagtggcaaagggcaat
gcatctggtaaaaagtacaaatttgtgatgactgctcatggcaaatatgagaagattcct
gttgatgatgatgatgatgatgatgaaaatatggatgaatacacgaatggaaaagcagac
ctataccatggtgaatattga
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