Oncorhynchus tshawytscha (Chinook salmon): 112223640
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Entry
112223640 CDS
T05605
Name
(RefSeq) nestin
KO
K07609
nestin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112223640
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type VI
112223640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
CATRA-C
Motif
Other DBs
NCBI-GeneID:
112223640
NCBI-ProteinID:
XP_024242503
LinkDB
All DBs
Position
LG03:complement(19247682..19258428)
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AA seq
2054 aa
AA seq
DB search
MELHSLRHHHSHRTDNKLQMLNLNQRLETYLGRVRLLEEENKLLCQELQALRVSGQGGRM
GLEDKLSLARQEVEEAWREKDRVELELGSLGEELQVLGLQRQWEADAHGEVKKKLADSRK
EMEEEKRAQIWLREKVSQLEKQIQFQIQTHQEDVAGFQATLIQARPALPSPPPQTGTQLP
SLQELGEEYSQMAVRAWHEAAMVFQGQVDSLDESLNQARTRLAQVGQEKIESQLKLQALK
NELQSAQDRRQCLERSVAKQRDMQRQEIQNLQAHLEVLEMEKGALGNQIDTLLTESRGLV
QLKMSLGMEVATYRALLDNESLMGDFPSTNQLRSTYTSDGVPSSRGVKQSFQTQLATSHM
ISPFSTIHRASPRSNVTMMSASPIWTQNQVTLNETPESCRKTEEEHVDFDLGSNRQVIWS
TPYPKVPQDGISVDHFRPQDVHEEVNYAEPLSPPTEEAGADVVSWLGSDHKEQSMWDLEK
EEEDQNIVRTWVAKDKPVLEPAMSHQVEISFSMPTVFSTDAQELYSPSVRDERAGSVTGA
HSAFSANDDNDVPFEMSSEKEEPLLDLPYGPMIALEERDLETARKDAEWVGKEGLESETK
SVLEPAFETFTSSQAFEYNKPKEFNQEDNMSYASTQASHGSEEAFHHVKRVEEDVINLTK
EDDENYMSNKDEEQLEDELRPYGYGKDDCERLAGFNKENCVTERIDKFNREVIISYESAQ
ASHWSEEVFHHVERLEEGDINFTKGDDENDMYNKREMQYALHPNGDVNDEWDRVGGYTEE
NGIRERMDEGKDQEGKDHMKEEEMWNNRETQPNQSDQEHIPSNVEKLNQFEQEHIPLGRE
KRNLSDNDKEDHDEANYCQNTSVSWRAELEGDSYAQDNTLADTHPLIRYKSDETDANTQA
SHMGESDSSDGEQDREVCQTGSGTWGEGKSKQFDTMEDLYEESEGDVIDQERNMGSTHQD
DVDASQTKEHATQENDEENAVDQLIQEAEEEQSYEELTEPGEYSMMCSDEDNNEERIDRL
VEQELENLSISSYSEHFNGQMIESESVLSLQIVSHTELSQTQDILYSEEVEQIHSVRLNQ
SEQEHTTTGGEKLNQSEQEHTTSGGEELNQSEQDHMTSGGEKLNQSEQEHTTSGGEKLNQ
SEQEHMTSGGEKLNQSVQEYINSGREKLNQSEQEYIPSDGEKLNQSEPEYITSGEEKMYQ
SEQDYIPSDEEKLNQSEQENIPLSGEKLNESEQEYLPSDGEKMNQSEPEYITSGREKPNL
YAQEHIPSDREKLNLTEQDNIPLGGEKLNQSEPEYITSGREKPNLYAQEHIPSGREKLNQ
SEHEHIPSKGKKLNQSEQEYIPSGGEKLNLYEQEPITSDREKMNQSEPEYITSGREKPNL
YAQKHIPSDREKLNLTEQDNIPLGGEKLNQSEPEYITSGGEKINQSVPEYIPQGKENMNQ
SEQENITSGGEKLNLYARENIPSDSEKINQCEQENIPSDREKLNQSEPEYIPSGGEELNQ
SEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSGGEELNQ
SEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSGGEELNQ
SEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSGGEELNQ
SEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSGGEELNQ
SEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSGGEELNQSEPEYIPSEVMYSMH
SRIPMTPEHTSLRESSAEISKAEYLAQGKVFSEELGTEAVPDKIEGEDDQNLSMLTHEDF
TESHSTHSSLNSRPESQTNMNNSDIEESNSTDDESPNASQYLQCANKANLTADQVDFLDV
AVSHYEDCSALIEHSAEEVTSYQASHECLQTDKWEVLESPNKHLESGDPFAGHKRDSERS
SKTDSKGRDLHSFLSSGVHSNFWGSNLETGASYQPDEPYDHVTKLPNQNLALADNLSWVD
LESTGGQLEHKDGQ
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atggagctccacagcctccgacaccaccacagccaccggaccgacaacaagctccagatg
ctgaacctcaaccagcgcctggagacctacctgggccgagtgaggctgctggaggaggag
aacaagctactatgccaggagctccaggccctgagggtcagtggccagggggggcggatg
ggcctggaagacaagctgagcctggccaggcaggaggtggaggaagcctggagggagaag
gaccgggtagagctggagctagggagtctgggtgaggagctccaagtcctggggctgcag
agacagtgggaggcggacgcccatggggaggtgaagaagaagctggcagacagcaggaag
gagatggaggaggagaagagggctcagatctggttaagagagaaggtgagccagctagag
aaacaaatccagttccagatacaaacccaccaggaagatgttgctggcttccaggctaca
ctaatccaagccagacctgccctgccatcccctccaccccaaacgggcacccagcttccc
agcctccaggagctgggtgaggagtactcccagatggctgtcagggcgtggcatgaggcg
gccatggtgtttcagggccaggtagacagcctggacgagtctctaaaccaggccagaacc
cggttggcccaggtgggccaggagaaaattgagagccagctgaaacttcaggccctgaag
aatgagctgcaatcagcccaggatagaaggcagtgtctggagaggagtgtggccaaacag
agagacatgcagaggcaagagatacaaaacctgcaggcccatctggaggtgttggagatg
gagaagggggcgctgggaaatcagattgacactcttctgacagaaagtaggggcctggtg
cagctgaagatgtctctaggcatggaggtggccacatacagagctttactggacaatgaa
agtctgatgggggatttcccttcaacaaatcagctaaggagtacctacacatctgatgga
gtccccagctctcgaggggttaagcaaagcttccagacacagctggctaccagtcacatg
atcagtcccttctctaccatccatagagcaagcccacgatccaatgtaacaatgatgtcc
gcatcaccaatctggactcaaaaccaggtaaccctgaacgaaacacctgagagttgtcga
aagacagaggaagagcatgttgactttgacttagggtccaaccggcaggttatttggtca
acgccttaccccaaagtaccacaggatggaatttcagtcgaccacttcagaccccaagat
gtccatgaagaagtcaactatgctgagcctctctcacctcccactgaagaggcaggagct
gatgttgtatcttggcttggttctgaccataaggaacaatccatgtgggatttagaaaag
gaggaagaggatcagaacatagtcagaacctgggttgctaaagacaaaccagttctggaa
cctgccatgagtcaccaggttgagatcagcttcagtatgccaactgtgttcagcactgat
gctcaagagctctacagcccttcagtgagggatgagagagcaggttcagtgacaggggca
cattctgctttctcggcaaatgatgataatgatgtaccttttgaaatgtcttctgaaaag
gaggaacctctactagatctgccttacggtcccatgattgcattggaggaaagagatctc
gaaacagcaaggaaagacgctgaatgggtggggaaagaaggcttggagtctgaaactaaa
tcagtgctagaacctgcatttgagaccttcacaagcagtcaagcttttgagtacaacaag
ccaaaagagttcaaccaagaggacaatatgtcatatgcatctactcaagcctcccacggt
tcagaagaggcatttcaccatgttaaaagagtggaggaagatgttattaatctcacaaaa
gaggatgatgaaaactacatgtctaacaaagatgaggagcaattggaagatgaattgcgc
ccctatgggtatggtaaggatgattgtgaaagattggcagggttcaataaggaaaattgt
gtgacagaaagaatcgataagttcaaccgagaggtgattatctcatatgaatctgctcaa
gcttctcactggtcagaagaggtatttcatcatgttgaaagactggaggaaggtgatata
aatttcacaaaaggggatgatgaaaatgatatgtataataaacgtgagatgcaatatgca
ttgcaccccaatggggatgtaaatgatgaatgggatagagtgggaggatacactgaagag
aatggaattagagaaagaatggatgaaggaaaggatcaagaaggaaaggatcatatgaaa
gaggaagagatgtggaataacagagaaacccaaccaaatcagtctgatcaagaacatata
ccttcaaatgtagagaaactgaatcaatttgagcaagagcatatacctttaggcagagag
aaacggaatctatccgacaatgacaaagaggatcatgatgaggcaaactactgtcaaaat
acttctgtttcatggagggctgagctagaaggtgacagctacgctcaggacaacacactg
gccgacacacaccccctgatccgttacaagagtgacgagacggatgccaacactcaggct
tcacacatgggagaaagtgactccagtgatggtgaacaggacagggaggtttgccagaca
ggatcaggcacctggggcgaaggcaagtccaaacagtttgacaccatggaggatctgtat
gaagagtcagaaggggatgtcatagatcaggaacgtaacatgggctccactcaccaagac
gacgtggatgctagccaaacaaaggagcatgctacacaggagaacgatgaggagaatgca
gtagatcagttgattcaggaggcagaagaggaacaatcctatgaggaacttacagaacct
ggagagtactccatgatgtgctctgatgaggacaataatgaagaaagaattgatagattg
gtggagcaagagttagagaatttatctatatccagttacagtgaacactttaatgggcag
atgattgagagcgagtcagtactgagtcttcaaattgtgtctcacacggaactttcccag
acacaagacatattatacagtgaggaggtagagcagatacactcagtaagactgaatcaa
tctgaacaagagcatacgaccacaggcggagagaaactgaatcaatctgaacaagagcac
acgacctcaggcggcgaggaactgaatcaatctgagcaagaccatatgacctcaggcggc
gagaaactgaatcaatctgagcaagagcatacgacctcaggcggcgagaaactgaatcaa
tctgagcaagagcatatgacctcaggcggagagaaactgaatcaatccgtgcaagaatat
atcaattcaggcagagagaaactgaatcaatctgaacaagagtatataccctcagacgga
gagaaactgaatcaatccgagccagagtatataacttcaggagaagagaaaatgtatcaa
tccgagcaagactatataccctcagacgaagagaaactgaatcaatccgagcaagagaat
attcctttaagcggagagaaactgaatgaatctgaacaagagtatttaccctcagatgga
gagaaaatgaatcaatccgagccagagtacataacttcaggcagagagaaaccgaatctg
tatgcgcaagaacatataccctcagacagagagaaactgaatctcactgagcaagataat
atacctttaggcggagagaaactgaatcaatctgagccagagtacataacttcaggcaga
gagaaaccgaatctgtatgcgcaagaacatataccctcaggcagagagaaactgaatcaa
tctgagcacgagcatataccttcaaaaggaaagaaactgaatcagtctgaacaagagtat
ataccctcgggcggagagaaactgaatctatatgagcaagaacccataacatcagacaga
gagaaaatgaatcaatccgagccagagtacataacttcaggcagagagaaaccaaatcta
tatgcgcaaaaacatataccctcagacagagagaaactgaatctcaccgagcaagataat
atacctttaggcggagagaaactaaatcaatccgagccagagtatataacttcaggcgga
gagaaaattaatcaatccgttccagagtatataccccaaggcaaagagaacatgaatcaa
tctgagcaagagaatataacttctggcggagagaaactgaatctatatgcgcgagaaaat
ataccctcagacagcgagaaaattaatcaatgcgagcaagagaatataccttcagacaga
gagaaactgaatcaatctgagccagagtatataccctcaggtggagaggaactgaatcaa
tctgagccagagtatataccatcaggtggagaggaactgaatcaatctgagccagagtat
ataccatcaggtggagaggaactgaatcaatctgagccagagtatataccatcaggtgga
gaggaactgaatcaatctgagccagagtatataccatcaggtggagaggaactgaatcaa
tctgagccagagtatataccatcaggtggagaggaactgaatcaatctgagccagagtat
ataccatcaggtggagaggaactgaatcaatctgagccagagtatataccatcaggtgga
gaggaactgaatcaatctgagccagagtatataccatcaggtggagaggaactgaatcaa
tctgagccagagtatataccctcaggtggagaggaactgaatcaatctgagccagagtat
ataccatcaggtggagaggaactgaatcaatctgagccagagtatataccatcaggtgga
gaggaactgaatcaatctgagccagagtatataccatcaggtggagaggaactgaatcaa
tctgagccagagtatataccatcaggtggagaggaactgaatcaatctgagccagagtat
ataccatcaggtggagaggaactgaatcaatctgagccagagtatataccatcaggtgga
gaggaactgaatcaatctgagccagagtatataccatcaggtggagaggaactgaatcaa
tctgagccagagtatataccctcaggtggagaggaactgaatcaatctgagccagagtat
ataccatcaggtggagaggaactgaatcaatctgagccagagtatataccatcaggtgga
gaggaactgaatcaatctgagccagagtatataccctcagaggttatgtattcaatgcac
tctaggattccaatgacacctgaacacacatctcttagagaaagttcagcagaaatatcc
aaagcagaatatttggctcaaggtaaggtcttcagtgaggaactgggaactgaagctgta
ccagacaaaatagaaggagaggatgaccagaacctttctatgctgactcatgaagacttt
actgaaagccattctacccacagcagtttaaacagcaggcctgagagtcaaaccaacatg
aacaactcggatatagaagagtccaacagcacagatgatgagtctccaaatgcaagccag
tatttgcaatgtgccaacaaagcaaatctaactgcagatcaggtagacttcttagatgtg
gcggtctctcactatgaggattgcagtgctcttatagaacattctgcagaggaggtcact
agctatcaggcaagtcatgaatgtcttcagacagacaaatgggaagtcttagaaagtcca
aacaaacacctggaatctggagatccttttgcaggtcacaagagagactcggagagatca
tccaaaactgacagcaaaggccgagacctccacagcttcctcagctctggtgtacacagc
aacttctggggttccaatctggaaacaggagcctcctatcaaccggacgagccatatgac
catgtgaccaagctacccaatcagaacctagccttggctgataacctatcctgggtggat
ttggaatccacaggcggccaattggaacataaagatggacagtga
DBGET
integrated database retrieval system
