Oncorhynchus tshawytscha (Chinook salmon): 112224084
Help
Entry
112224084 CDS
T05605
Name
(RefSeq) liprin-alpha-3 isoform X1
KO
K26226
liprin-alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112224084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112224084
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112224084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIP-1
SAM_1
SAM_2
Tc-38
Motif
Other DBs
NCBI-GeneID:
112224084
NCBI-ProteinID:
XP_024243149
LinkDB
All DBs
Position
LG25:4659526..4724883
Genome browser
AA seq
1212 aa
AA seq
DB search
MMMCEVMPTISEDGRGGGLSSPGVGAGGPVGAIGEGDYGGRGESRGGGDEGGSTGNLESL
MVNMLTERERLLESLRETQDSLGAAQLHLRELGHEKDSLSRQLSIALPQEFAVLTKELNV
CREQLLEREEEISELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVE
VLKALKSLFEHHKALDEKVRERLRVALERVTLLEDQLQATAQEVISLRDQIKRRHKGLDG
GKDRLPNGPSSGLDGEIGRQRETEIERLRAELCQLKERLALMCRQVGEIEEQLAAARREV
TKSEEANQKLQRDVKEALCQREDMEERITTLERRYLSAQREATSLHDIKDKLENELASKE
SLHRQSEEKNRQFQERLEDAKQKLQQTLQRAETLPEIEAQLAQRVAALNKAEERHGNFEE
RLRQIEGQLEEKNQELQRARQREKMNDEHNKRLSDTVNKLLSESNERLQLHLKERMAALE
EKNALSEELANMKKIQDDLLANKDQLIAELERIQLEVDQLRGRPGSSYSRSLSGSASELR
YPQGGGSLPAGYGSSSCGVVVRRAHRGRWASPRDESNKYGERDSGTMLGPRFEGGTEGGC
SDDEEDRETLFGSELLSPSGQTDVQTLAIMLQEQLEAINKEIKLIQEEKESTELRTEEIE
SRVSSVAMDSNPLPPSSLGGGRESVGRGYMTPSLTSSTLASPSPPSSGHSTPRLSHSPAR
ESDRQNSKESDDCRALALIDSTPPVPRALRLDRMTHTHPGAGLDDHREFCSSQDSLHKAS
KKKSIKSSIGRLFGKKEKGRIGGPGSQSASLASTPSDDLGSADPLGLAKMGTGTVEKDRR
SRKKQDLLEQACRQGLPFASWDGPTVVTWLELWVGMPAWYVAACRANVKSGAIMANLSDT
EIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPASTHSSTSNIWMTHAEMESLTAAIKPE
VKEFSWDQILAYGDMNHEWVGNEWLPSLGLPQYRSYFMESLVDARMLDHLTKKELRGQLK
MVDSFHRVSLHYGIMCLKRLNYDRKELERRRDENQHQNQDVMVWSNDRVMCWVQAIGLKE
FADNLTESGVHGALLALDDTFDYTDLALLLQMPNQNTQARQMLEKEYNALISMGTERRPD
EDGTKTFTRSPSWRKMFREKDLRGVTSDSSETLPANFRASAISTPSVTLRKVQSEVNSGP
RGESGSVRTYSC
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgtgcgaagtgatgcccaccatttcggaggacgggcgcggtggaggcctctcc
tctcctggggttggggctgggggccctgttggtgccataggggaaggggactatggtggc
cgaggagaatcaaggggtgggggtgatgagggaggcagcacagggaacctggagtccctg
atggtcaacatgctgaccgagagggagaggctgctggagagcctgagggagacccaggac
agccttggggcggcccagctacacctcagagagctaggccatgagaaggactccctctcg
agacaattgtccatcgccctgccacaggagtttgctgtgctgactaaggagctgaatgtt
tgccgggagcagctactggagagggaagaggagatttctgagctcaaggcagagagaaac
aacacacgtttgttactagagcacctggagtgtcttgtgtcccgccacgagcgcagtctg
aggatgacggtggtgaagagacaggcccagtccccagcaggggtctccagtgaagtggag
gtcctcaaggccctcaagtccctgtttgaacaccacaaggctttggatgagaaggttcga
gagcgactccgggtggcccttgagagagtgactcttttggaggatcaactacaagcaaca
gcacaagaggtaatctctttaagagaccaaattaaaagacggcataaagggctggacggc
gggaaagatcgcctacccaatggaccgtcttctggattggacggggagatcggcagacag
agagaaacggagatagagcgcctaagagctgagctctgccagctgaaagagagactggcc
ctgatgtgtcgacaggttggggaaatagaggaacagcttgcagccgccaggagggaggtg
acaaagtcggaggaggccaatcagaagctccagagggacgtgaaggaggctctgtgccag
agggaggatatggaggagaggatcactacattagaacgcaggtaccttagtgctcagagg
gaagcaacctctctacatgacatcaaagataagctggagaatgagctggccagcaaggag
tcactgcacagacagagtgaggaaaagaacaggcagttccaggagcgtctggaggacgcc
aagcagaagctccagcagaccctgcagcgggccgaaaccctgcccgagattgaggcccag
ctcgcccagagagtggctgccctcaacaaggcagaggagcgccatggaaactttgaggag
cgactacgacagatcgagggacaacttgaagagaagaatcaggagttgcagagggcaagg
cagagagagaaaatgaatgacgaacacaacaaacgcctctcggatacggtgaacaagcta
ctgtctgagtccaacgagcgactgcagcttcacctcaaagagagaatggctgccctagag
gagaagaatgcactgtcagaggagttagcaaacatgaagaaaatccaagatgatctttta
gcgaacaaggaccagcttatagccgagctggagaggattcagctggaggtggatcaactg
agggggaggcctggctcttcttattccagatctctttcagggagtgcctcagagctccgg
tacccccagggtggtggctccctcccagccggctatggcagctcctcctgtggtgtggtg
gtccggagggcacaccgtggccgatgggcttcccctagggatgaaagcaacaagtatgga
gagagggacagtggcaccatgctgggtcccaggtttgaggggggaactgaggggggctgc
tcagacgacgaggaggacagggagaccctgtttggctcggagctgctctcgcccagtgga
cagacggacgtgcagaccctcgccatcatgctgcaggagcaactggaggccatcaacaag
gagatcaagctgatccaggaggagaaggagagcactgagctgaggacggaggagatcgag
agccgggtgagcagtgtggccatggactccaaccctctccccccctcctcactgggcggg
ggcagagagagtgtggggaggggctacatgaccccctccctcacttcctccaccttggcc
tccccgtctccccctagctctggacattccaccccccgactgtcacattcccctgctcga
gagtcagacagacagaacagcaaagagagcgacgactgccgggcgctagccctgattgac
tctacccctccagttcctcgcgctctgcgattagacagaatgacccacacacacccaggt
gcggggctggatgatcaccgtgaattctgcagtagtcaggactctctccacaaagccagc
aagaagaagagcatcaagtcctccattggacgcctgtttggaaagaaggagaaagggagg
attggaggacctgggagtcagtctgcctctctggcctccacgccctctgatgacctggga
tcagccgaccccctgggccttgccaagatgggaactggcaccgtggagaaagatcgccgc
agcaggaagaaacaagacctgctagaacaagcctgtcgtcagggtctgccttttgcctca
tgggatggccccaccgtggtcacatggcttgagttgtgggtgggcatgcctgcctggtat
gtggctgcgtgtcgtgccaatgtgaagagcggtgccattatggccaacctgtcggacaca
gagatccagcgggagattggcatcagtaaccccctgcatcgccttaaactacgcctggcc
attcaggagatggtgtccctcaccagcccctcggcaccggccagcacacactcttcgacc
agtaatatctggatgacacatgcagaaatggagtcactgaccgctgccataaaaccagaa
gtgaaggagttcagctgggaccagatcctggcctacggggacatgaatcatgagtgggta
gggaatgagtggttgcccagcctgggtctgccccagtaccgttcctacttcatggagtct
ctggtggatgctcgcatgctggaccacctcaccaagaaggagcttaggggacagcttaaa
atggtggacagcttccatagggtcagtctacattatggcatcatgtgcttgaagcgtttg
aactatgacaggaaggagcttgaaaggaggagggatgagaaccaacatcagaaccaagat
gtgatggtatggtccaatgatcgagtgatgtgttgggtccaggccattgggctaaaggag
tttgcagataatctcacagagagtggggtccatggggccctcctagccctggacgacacg
tttgattacaccgacctagccctgctcctccagatgcccaatcagaacacacaggcgagg
cagatgctggagaaggagtacaatgctctcatctccatgggaactgagagaagaccagat
gaggatggcactaagacgttcactcgctcaccttcgtggagaaagatgttcagagagaag
gacctccggggcgtgacctctgattcctcggaaacgttacccgccaacttccgtgcctcc
gccatctccacgccctccgtcaccctgaggaaagtccaaagtgaagtgaactccgggccc
aggggtgagtcagggtcagtgagaacatattcctgctag
DBGET
integrated database retrieval system
