Oncorhynchus tshawytscha (Chinook salmon): 112224172
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Entry
112224172 CDS
T05605
Name
(RefSeq) next to BRCA1 gene 1 protein isoform X1
KO
K17987
next to BRCA1 gene 1 protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112224172
04137 Mitophagy - animal
112224172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112224172
03029 Mitochondrial biogenesis [BR:
otw03029
]
112224172
Membrane trafficking [BR:
otw04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
112224172
Pexophagy
Other pexophagy associated proteins
112224172
Aggrephagy
Cargo receptors
112224172
Xenophagy
112224172
Other autophagy associated proteins
Midbophagy
112224172
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Other mitophagy factors
112224172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
N_BRCA1_IG
PB1
ImpA_N
Motif
Other DBs
NCBI-GeneID:
112224172
NCBI-ProteinID:
XP_024243303
LinkDB
All DBs
Position
LG25:complement(9990166..9999688)
Genome browser
AA seq
1069 aa
AA seq
DB search
MGLPVTIKVNFRGNVKRFVAPDLDKSEWESVEAWIKASFGISHFQVKYFDEDNEEVSINS
QEEYEEGVKSAEKQGNQLHMNVYKAKQGQAGTGPGKTQEVKELKGELRPAPPYPSRVKTV
DKGTQVTPERDAVVVKDNKVTKPEDKLPPAWFRSYMEKFKDEVVKEVVERMCSDFSGQCC
THKTPNCDGPLEALGAVGGVNIKGPKVNSSSTGPPAYSSLGYTPECSKCKRPATDGAYQC
RVCPSCILCELCRHSHDPSHNLVRTKTPLSIPEHGMSGELRFPRRGDRTVRKAERQRLKA
ERRQLKAEVKEIKKKLRLEKRGLQWSGPASTSARSNVATTQAPAAAPAPGPAPDPQASSP
EGPEVSYTTLVPTMAALFLDENLPDGTRREPGTKFIKYWKMKNSGIITWTSETKLKCMWG
NLALALEENREVAVPLLQPGQVGVVSVAFIAPVMEGTYTSHWRLAHCGEQFGPRVWCSIV
VAPSTSPHAKYPQNKYLEVEPGPVVVKVEGMSSNSSRDSGLAVSVDYCHRDYHFPSVDLL
TAQDLLSCELLDINVVQELEKVPNNTPVDLTPCVSPLPHNGPLLEHPDTDQVENNTEMNR
VNNLLGVNGENSDPPGHEEEDISGTQFVCETVIRSLALEEAPDHKPPRRHQPSYCKPKVF
GAVASGPVFGYERKVFDTALRVTGPDLLMMGVMRDQGSPPGLPQITLSEETVTEVLLAPE
VENVYMELYAMKEEDEEDNKGRKDVKDQKAEDKEDEKDDNYVEIEEEKEHDEEEEEEERA
DWDEVSSQISTLSSSSCEDYVIVLPDCFDTSRPLDESTHSSALSEPVTTAAVEQEAAPDS
EPEELDRATPEGERQERGEAAPTVTETTIHSSVNQMLCASQTLDAVPLAPEVVPPPVSLL
PPQALYTHRSEAVHVAEPTSQRASGPVEPCQPVVHLNVSSTTRPSGLASALETTNSRPCS
SLRPRGQGGITEGLVKGVLSVAASAYKALFTGQSCSTQRGVDPASQDASMMAVLLEMGFR
DQRFNQWLLMKHRHNLLHTVNELVAMADNTLLTGRSANQPGRYTTPDTQ
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgggtctccctgttactattaaagtgaatttcaggggaaatgtaaagagatttgttgct
ccagatttggacaagtcggaatgggagtcggtggaagcctggataaaagcatcatttgga
ataagccattttcaagtgaaatattttgatgaggacaacgaggaggtttccatcaatagc
caagaggaatatgaggagggtgtgaagagtgcagagaagcaggggaaccagttgcacatg
aacgtttacaaggcgaagcaggggcaggctggcactgggccgggcaagacccaagaagtg
aaggagctgaagggggaactccggccagccccgccgtacccctccagggtcaaaactgtg
gacaaaggcacacaggtcactcccgagagagatgctgtggttgtgaaggacaacaaagta
actaagccagaggataaacttcctccagcttggtttagatcttacatggaaaaattcaag
gatgaggtggtgaaggaggtagtggagaggatgtgcagtgacttctctggccagtgttgc
acccacaagacccccaactgtgatgggcctctcgaggcccttggagcagtgggcggagtc
aatatcaaaggcccaaaggtgaactcctcctccaccggcccccccgcctactcctcattg
ggctacactccggaatgcagcaaatgcaagagaccagccaccgatggagcttatcagtgc
agagtgtgtccgtcctgtatcttatgtgagctgtgtcgacacagccacgaccccagtcac
aacctggtgagaaccaagactcccctctccatccctgagcatgggatgtcaggagaatta
aggtttccaaggcgaggagaccggaccgtgcgcaaggctgagcgtcagcgcctcaaagcc
gagcggaggcagctcaaggccgaggtgaaggagattaagaagaagctgaggctggagaag
aggggcctgcaatggagcggccctgcttcaacctccgccagatccaacgtggccaccacc
caggcccctgctgctgccccagcaccaggccctgccccagacccccaggcttccagtcca
gagggtcccgaggtctcctacaccaccttggtgcccactatggctgccttgtttctggat
gaaaatctgcctgacgggacccgccgagagcccggcaccaagttcatcaagtattggaag
atgaagaactcaggcatcatcacctggacctccgagaccaagctgaagtgcatgtggggt
aacctggcactggcattggaggagaaccgtgaggtggccgtgcccctcctgcagccgggc
caggtgggcgtggtcagtgtggccttcatcgccccggtgatggagggcacctacacctcc
cactggcgccttgcacactgcggagagcagtttggccctcgcgtgtggtgcagcattgtg
gtggcccccagcaccagcccacacgccaagtatccacagaacaaatacctggaggtggag
cccgggcctgtggtggtgaaggtggaggggatgtcgagtaacagctccagggacagtggt
ctggccgtgtctgtagactactgccacagagactaccacttcccctctgtagacctgctc
actgcacaggatcttttgtcctgtgaattgctggatattaacgttgtgcaagagttggag
aaagttccgaacaacactccagtcgatctgaccccctgtgtgtcccctctgccccacaat
ggccctctactggagcacccagacaccgaccaggttgaaaacaacacggagatgaaccgg
gtcaacaatctgctaggagtgaatggtgagaactctgacccacctggccacgaggaggaa
gacatcagcgggactcagtttgtgtgtgagacggtgatccgctccctcgccctcgaggag
gctcccgaccacaagccccctcgcagacatcagcccagctactgcaagcccaaagttttt
ggagctgtagcctcgggccctgtcttcggctatgagaggaaagtatttgacaccgcatta
agagtgacaggaccagatttgctgatgatgggtgttatgagagatcaaggttcacctcca
ggccttccccagatcacactttcagaggagactgtcacagaggtgcttctggccccagag
gttgagaatgtgtacatggagctgtatgcaatgaaggaggaggacgaggaagacaacaaa
ggcagaaaggatgtgaaggaccagaaagccgaggataaagaagatgaaaaggatgacaac
tacgtggagattgaagaggagaaagaacatgatgaggaggaagaagaagaagaacgagcg
gactgggacgaggtgagcagccaaatctccaccttgtcctcatcctcctgcgaggactac
gtcatagtcctgccggactgcttcgacaccagtcggccgctggacgagtccacgcacagc
tccgccctctcggagcctgtcactaccgcagccgtggagcaggaggcggcgccagactct
gagcctgaggagctggatagagccaccccagagggggagaggcaagagaggggcgaggct
gcacccacagtcacagagaccaccatccacagcagtgtcaaccagatgctgtgtgcctcc
cagacgctggatgctgtcccccttgcccctgaggtggtgccaccgccggtctctctcctg
cccccacaggccctgtacacacacaggtctgaagcagtccacgttgcagagccaacaagt
caacgagcgtctggaccagtagaaccatgccaaccagtggtccatttaaatgtatctagt
acaaccagaccatcgggcttagccagtgccttggagacgaccaactccagaccctgcagc
tccctgcgcccaaggggccaaggcggtatcacggagggactagtaaaaggcgttctgtca
gttgcagcgtctgcctataaggctctcttcactggacagagctgctccacacagcgtggt
gtggacccggccagccaggacgcctccatgatggccgtgctgctggagatgggcttcagg
gaccagcggttcaaccagtggctgctgatgaagcacaggcacaaccttctgcacactgtc
aacgagctggtcgccatggccgacaacacactactgacgggccggtcggccaatcagcca
ggccgctacacgacccctgacacccaatga
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