Oncorhynchus tshawytscha (Chinook salmon): 112224219
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Entry
112224219 CDS
T05605
Symbol
cstf2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112224219 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112224219 (cstf2)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112224219 (cstf2)
U7-dependent histone pre-mRNA processing factors
112224219 (cstf2)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
112224219
NCBI-ProteinID:
XP_024243397
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All DBs
Position
LG21:8746196..8779681
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AA seq
542 aa
AA seq
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MANLAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRET
GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIES
PYGDNIIPDEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAFALL
QAQVVMRIVDPEIALKMLHRQTPVQPLVPNSQAGPVPVANQPIPLPNAPVSQSQPMPGMH
MNGAPQMMQPPPIGGGPGPMPGQGLVGPPGNLQHSPVGSSGQAAIERPQGPGGIPPRGLL
GDGPNDPRGGTLLSVTGEVIEPSRGGAFIGAPPPHQGPPMHMNQIVGGPPSDMRPPHDMR
GPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGESRGMMGEPR
GPPMMEPRGPPMETRGRDPRAVDTRGPVSGQRVPMAQGMQGPPPHSMNPNAPPTARPGPG
VPQSGGSFSPGQSQVTSQDHEKAALIMQVLQLTPEQIAMLPPEQRQSILILKEQIQKTAG
AP
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttagcagctgctgttgttgctgccgctggtagagatcccgccgttgaccgt
tcattgcgctctgtctttgtgggaaacattccatatgaggccacagaggagcaactgaaa
gacattttttcagaagtcgggcttgttgtcagctttaggttagtgtatgatagggagaca
ggcaagccaaaaggatatggcttctgtgagtatcaagaccaggagaccgccctcagtgcc
atgcggaaccttaacggaagagagttcagtggccgagctctccgtgtcgacaatgctgct
agtgagaagaataaagaagagctcaagagtttggggacaggggcccctatcattgagtct
ccctacggggacaacataataccagatgaggctccagagtctataagcagagctgtggcc
agtctgcccccagagcagatgtttgagctcatgaaacagatgaagctgtgtgtgcaaaac
agtccccaggaggccaggaacatgctgttgcagaacccccagctggcctttgccctgctc
caggcccaggtggtcatgaggatcgtagaccctgagatcgccttgaaaatgcttcaccgt
caaaccccagtgcagccattggttcccaacagtcaagctggaccagtgccagtggccaac
cagcctattccactgcccaacgctcctgtctcccagtcacagccaatgccgggcatgcac
atgaacggagccccccagatgatgcagccccctcccataggtggaggacctgggcccatg
ccagggcagggactagtgggaccaccaggaaacctccagcactctcccgtaggatcgtct
gggcaagctgctatcgagcggcctcaaggaccaggtggtatcccccccagaggcctgctt
ggcgacggccccaacgacccccgaggaggaaccctgctctcagtcacaggagaggtcatc
gaacccagtcggggaggagccttcattggcgcccccccaccacaccaggggccccccatg
cacatgaaccagatcgttggcgggcctccttcggacatgaggccacctcacgacatgaga
ggaccccccatgggtgaacccaggggcatgatgggagagccccggggaccccccatgggt
gaacccaggggcatgatgggggagccccggggaccccccatgggtgaacccaggggcatg
atgggggagccccggggaccccccatgggtgaatccaggggcatgatgggggagccccgg
ggaccacccatgatggagcccaggggaccccccatggagacaagaggtcgtgaccccaga
gcggtggacacccgtggaccagtgtcaggccagagggttcccatggcccaaggaatgcag
ggtcccccccctcactccatgaatcctaatgcccctccaactgccagaccgggtcctggt
gtaccacagtctggaggtagcttcagcccagggcaaagccaggtgacttcacaggaccat
gagaaggccgccttgatcatgcaggtgctgcagctgaccccagaacagattgccatgctg
cccccagagcagaggcagagcatcctcatcctcaaagagcagatccagaagaccgccggg
gcaccctaa
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