Oncorhynchus tshawytscha (Chinook salmon): 112224234
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Entry
112224234 CDS
T05605
Symbol
vps35l
Name
(RefSeq) VPS35 endosomal protein-sorting factor-like isoform X1
KO
K25731
VPS35 endosomal protein-sorting factor-like
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112224234 (vps35l)
Membrane trafficking [BR:
otw04131
]
Protein recycling
Others
Retriever complex
112224234 (vps35l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
112224234
NCBI-ProteinID:
XP_042161872
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Position
LG25:12239513..12253371
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AA seq
977 aa
AA seq
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MAAVQWHSRARRYESELQSCGLEVAPVEFSDYHPLKSITVTDSKSRRGARKGSTSSSSSS
SSSVAPDPLSSMLDGTDPLSMFAAASASESPPTLSQSSSTGDLGRGKRREKEDEVGVDFE
PWSSKRGEILARFTTTEKLSINLFMGSEKGKAPSLASSAVSEKVRTRLEELDDLEEGSQR
ELLNLSQQDYVNRIEELNQSLKEAWASDQKVKALKIVIQCSKLLSDTAVIQFYPSKFVLI
TDILDTFGRLVYERIWSMCSDPRPLPVIIYSDPSPDSFTADEVNDTAKETCLNWFFKIAS
IRELIPRLYVEVALLKCNRFLTKCGIQETVPRLTAMIRGIGDPLVAVYARAYLCRIGMEV
APHLKDSLNKNFFDLLGTFRQIHGDSVQNQLVLQRVEIPVYLTLYSPAIHWILQCVSYRA
PEALLTEMMERCKKLGNNALLLNSVMWAFRAEFIATRATDFIGMIKDCDEAGFPQHLLFG
SLGRSLACADPPEAERLPILNEAWKVITKVRSPQDYINCAEIWVEFTCRHFTKREVNTVL
SDIIKHMTPDRAFEDAYPQLQSVIRKILTYFHDFSVLFSMERFLPFMDMFQKDSVRVGVC
LSIMDVFIKHQQEPTRDPVILNALLHVCKTMHDSVNALTLEDEKRSLALLINGFIRMVSF
GRDFEQQLSFCVEARATFCNLEPVLVQLIHTVNQLAMETRRVMRGSHSRKTAAFVRACAA
YSFITIPSLTSIFSRLNLYLLSGQVALANQCLSQADAFLKAAVSVLPEVPRSISIEGKLR
SSEGFLLDFINNFLSALLVVPDHPEAGVLFLVRGLLNMVQDYTWEDNSDAKVHVYISALP
LLAAMSQESYLYSIPKVDSNETLYGGDPKFLAEINKLCETLIGQVLDHLKTLGRDESVHR
QGSLAFSLFGCLLAHGDLRNNKLNQLAVNLWNLSHKQGYCNTRTSVRTLEFIKHQAQQPD
MAHLSDMLHRLTLQSRT
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgtgcagtggcactctcgtgcacgcaggtatgagtctgaactgcagagctgt
ggcctggaggttgccccagtggagtttagcgactaccatcccctcaagtccatcactgtg
acagactccaagtcgcggaggggagcgcgtaaaggcagcacctcctcctcctcctcctct
tccagctctgtggcaccagatcccctgagctccatgctggatggaacggaccccctgtcc
atgtttgctgcagcctctgccagcgagtcccctccaaccctctcacagagcagctccact
ggggacttgggtagaggaaagaggagggagaaggaggatgaggttggagtggactttgaa
ccgtggtcatccaaacggggagaaatccttgccaggttcactaccacggagaagctctcc
attaatctcttcatgggctcagagaaaggcaaggctcccagtcttgcctcctctgctgta
tcggagaaggtgcgaactcgcctagaggagctggatgacctggaagaggggtctcagcgg
gagctgctgaatctgtcccagcaggactatgtgaaccgtatcgaggagctcaaccagtct
ctaaaagaggcctgggcctccgaccagaaggtcaaggccctcaagatcgtcatccagtgc
tccaagctgctgtcagacacagctgtgattcagttctacccaagcaagtttgtcctcatc
acagacattctggacacctttggacgtctggtgtatgagaggatctggtccatgtgttct
gaccctcgccccctaccagttattatttattcagatccctctccagactcctttacagct
gatgaagtgaatgacacggccaaggagacctgcctcaactggttcttcaaaattgcctcc
atcagagagctcatcccacgactatatgtcgaggtagctctcctgaagtgtaaccgtttc
ttgaccaagtgtgggatccaggagactgtgcctcgcctcacagctatgatccgggggata
ggggaccccctggtggccgtgtatgcccgggcctacctctgtcggattgggatggaggtg
gctcctcacctgaaggacagcctgaacaagaacttctttgacctgctggggacgttccgt
cagatccacggcgacagtgtccagaaccagctggtcctgcagagggtggagatccccgtc
tacctgaccctctactcccccgccatccactggatcctgcagtgtgtctcctacagagca
ccagaggccctgctaacagagatgatggagagatgcaaaaagcttgggaataatgccctg
ctgctgaactcggtgatgtgggcgttcagggcggagtttatcgcgacgagagccaccgac
ttcatcggcatgatcaaggactgtgatgaggcaggattccctcagcacctgttgtttggc
tctctgggccgcagcctggcctgtgctgaccctcctgaggcggaaaggctgcccatcctc
aatgaggcctggaaggtcatcaccaaagtgcgaagtccacaggattacatcaactgtgct
gagatctgggtggagttcacctgtcgtcacttcactaaacgtgaggtcaacactgtgctc
tctgacatcatcaagcacatgaccccagaccgggcctttgaggatgcctatcctcagctt
cagtccgtgatacggaagatcctcacctactttcatgacttctctgtcctcttctccatg
gagcgtttccttcccttcatggacatgttccagaaggacagcgtcagggtgggggtgtgt
ctctccatcatggacgtcttcatcaaacaccagcaggagcccactagagatcctgtcatc
ctcaacgctctactccacgtctgcaagaccatgcacgactctgtcaatgctctgacgctg
gaggacgagaagagatctctggccttgttgatcaatggcttcatacgcatggtgtcgttt
ggccgtgactttgagcagcagctgagtttctgtgtggaggcccgggccaccttctgtaac
ctggagccagtgttggtgcagctcatccacactgtgaaccagctggccatggagacgagg
cgtgtgatgagggggagccactcccgcaagactgctgcttttgtcagggcatgtgctgca
tacagcttcatcaccattccctccctcaccagcatcttcagccgcctcaacctctacctg
ctgtctgggcaggtggccctggccaaccagtgtctttcccaggcggatgcattcctgaag
gcagcggtcagtgtgttgccagaggtgccacgcagtatcagtatcgagggcaaactgcgc
tcttctgagggcttcctgcttgacttcatcaacaacttcctgtcagcactactagttgtg
ccggaccacccagaggcaggggtgttgttccttgtgcgtgggctgctcaacatggtgcag
gactacacctgggaggacaacagtgacgccaaggtccatgtctacatcagcgccctgcca
ctactggctgccatgagtcaggagagctacctctactccatccccaaagtggactcaaat
gaaacactttatggaggagatcccaagtttttggcagagatcaacaagttatgtgaaact
ctgattggacaagtgctggaccacctcaagaccttgggtagagatgagagtgtccataga
cagggtagtctggccttctctctgtttggctgcctcctagctcacggggacctgcgcaac
aacaaactcaaccagctggctgtcaacctgtggaatctgagccacaagcagggttactgc
aacacacgcacctccgtgcggacattagagtttattaagcaccaggcccagcagccagac
atggctcacctttcagacatgctccaccgcctcaccttgcagtccaggacctga
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