Oncorhynchus tshawytscha (Chinook salmon): 112224289
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Entry
112224289 CDS
T05605
Name
(RefSeq) neurexin-1a-like isoform X1
KO
K07377
neurexin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112224289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112224289
Membrane trafficking [BR:
otw04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
112224289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_G_3
EGF
Syndecan
Motif
Other DBs
NCBI-GeneID:
112224289
NCBI-ProteinID:
XP_042161899
LinkDB
All DBs
Position
LG25:14993943..15064393
Genome browser
AA seq
1498 aa
AA seq
DB search
MCLRVCVMAVCVWAAAPLLCVWLCLCSLGGSRGEVLEFGGVSGQWGRFPVWNACCESILS
FSVRTHSEDGLLLYLDDEGFCDFLELLLLRGKLRLRFSIFCAEPAEVSSGVAVSDGHWHV
VRVKRDWRNTSLEVDGRMEGWAEVKSKRRDMTVFSHTFMGGVSPELHASPLRLTSPGVRD
HAPFAGWLTSVTINGSAVVMEGSEGVTMGGDGCGPDHMCQNGGVCSVVEQKNVCDCTDTG
YKGNDCSEEHYNPGLAHLMIGDQGKLRAREDYLATFKGSEYFCYDLSPSPIQSSSDEITL
SFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDV
KVTRNLRQHSGIGHAMVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPV
SNNFMGCLKEVVYKNNDVRLELSRLAKQGDAKMKVSGMVAFKCESVATLDPVTFDTPESF
VALSKWSAKKAGSISFDFRTTEPNGLMLFSHGKPRQQQRKDPRTPPTLKVDFFAIEMLDG
HLYLLLDMGSGTTKTKAIDRKVNDGEWYHVDFQRDGRSGTISVNSQRTAYTAPGDSEILD
LDDTLYLGGLPEDRQGLIFPTEVWTALLNYGYVGCVRDLFVDGQSKDIRRLAEVQRAVGV
KPSCSREPPKQCLSNPCQHSATCREGWNRYVCDCSGTGYLGRACERDATILSYDGSKFMK
VQLPVAMHTEAEDVSLRFRSQRAYGVLMATTSRNSADTLRLELDGGRVRLTVNLDCIRIN
CTASKGPETIFAGVGLNDNEWHTVRVVRRGKSLKLTVDDLQPVEGQMAGDHTQLEFHNVE
TGIVTEKRFMPAVPSNFIGHLQGLTLNGMPYIDLCKNGDIDYCELNAVIGYKSIVADPVT
FRSRSSYVTLPTLQAYYSMHLFLQFKTTSPDGLVLYNRGDGNDFIVVELVKGYLHYVSDL
GNGAHLIKGNSNSPLNDNHWHNVLISRDTNNLHTVKIDTKVTTQTTMGAKNLDLKGDLYV
GGVAKEMYRDLPKLVHSREGFQGCLATVDLNGRLPDLLADALATTGQVERGCEGTHTHTG
PSTTCQEDSCSNQGVCLQQWEGFSCDCSMTSFGGPLCNDAGTTYIFGRDGGVIVYTWPPN
ERPSTRADRLALGFSTQQKHATLLRVDSASGLGDYLQLQIDKGNIRVVFNVGTDDINIEE
TAKSVNDGKYHIVRFTRSGGNATLQLDDLPIIERYPSGNIDNERLAIARQRIPYRLGRVV
DDWLFDKGRQLTIFNSQTTVTVGRGKEAGQFQGQMAGLYYNGLKILNMAAEGHAHIRLEG
STRLVGDMPSSITPQSSAAAGANRSDPAANAGDITTTTATNRKQGGGTTQQSTDDLLVAS
AECPSDDEDIDPCDPSSAAHPPLPEVKPFPGTSEGVRESSSTTGMVVGIVAAAALCILIL
LYAMYKYRNRDEGSYHVDESRNYISNSATQPNGSTKDKPLGIAKISKNKKNKDKEYYV
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atgtgtttgcgcgtgtgtgtgatggcggtgtgtgtgtgggccgcggcccccctgctgtgt
gtctggctgtgcctctgtagccttgggggatccagaggggaggtgctagagtttgggggg
gtgtcgggacagtgggggcggttcccggtgtggaacgcgtgctgcgagagcatcctgtcg
ttcagcgttagaactcacagtgaggacggactgctgctttaccttgacgacgaaggattc
tgcgacttcctggaactattgttgctacgcgggaaactccgcctacgcttctccatcttc
tgcgccgagccggctgaggtgagttccggggtcgccgtgagtgacggacactggcatgtg
gttcgtgtgaaacgggactggaggaacacaagccttgaggtggatggaaggatggaggga
tgggcagaggtgaagagcaaacggagagacatgacagtgtttagccacacctttatgggc
ggggtttccccagagctccatgcctcccctctccgcctcacttcccctggcgtcagagac
cacgccccctttgctggctggctcacttcggtgaccatcaatggatcggcggttgtaatg
gaaggatcggagggcgttaccatggggggagacgggtgtgggccggaccacatgtgtcag
aatggaggggtgtgttctgtcgtcgagcagaagaacgtttgcgactgtaccgacaccggc
tacaaaggcaacgactgcagcgaagaacactacaacccaggtctggctcacctgatgatc
ggcgaccaaggaaagctcagagcccgtgaggactacttagcaacatttaagggatcagag
tatttctgctatgacctgtctcccagccccatccagtcctccagcgatgagatcaccctg
agctttaagaccctgcagaggaacggcctgatgctccacacaggaaagtcggctgactac
gtcaacctggccttaaagaatggagccgtgtcactggtcatcaacctggggtccggggct
ttcgaggccctggtggagccggttaacgggaagtttaacgataacgcatggcacgatgtc
aaggtcacgcgcaacctgagacagcactcaggcattggacacgctatggtgaccatctct
gtggacggcattctgaccactacgggctacacccaggaagactacaccatgttgggctca
gacgatttcttctatgtgggaggaagtcccagtactgccgacctccctggatctcctgtt
agcaacaacttcatgggctgcctcaaagaggtggtgtataagaacaatgatgtacggttg
gagctgtctcggctggctaagcagggagatgctaagatgaaggtgagcggtatggtggcg
tttaagtgtgagagtgtggcgaccctcgatcctgtgacctttgacaccccagagtcgttt
gtggcattaagcaagtggagcgccaagaaggcagggtcaatctcctttgacttcagaacg
acagaacccaatggactgatgctcttcagccacgggaaaccacgacagcagcagcgcaaa
gacccccgcacaccccccaccctaaaggtggatttctttgccatcgagatgctggatggt
cacctgtatttgctgctggacatgggctcaggaaccaccaagaccaaggccatcgacagg
aaggtcaatgatggggagtggtaccatgtcgacttccagagggacgggcgctcaggtact
atctcagtgaattcacagcgtacagcgtacacagctccaggggacagtgagattctagac
ctggatgatactctgtacctaggaggattaccagaggatcgccaaggactcatcttccct
actgaggtgtggacagcgttattgaactacggctatgtcggctgcgtgagagacctgttt
gtggacggtcagagtaaggacatccgtcgtctggctgaggttcagagggctgtaggggtt
aagccctcttgctccagagagcctcctaaacagtgtctgtccaacccctgccaacacagc
gccacctgcagggagggctggaacagatacgtgtgtgactgctctgggaccggatacctg
ggacgggcctgtgagagagatgcgaccatcctgtcctatgatggtagtaagtttatgaag
gtccagttgcccgtagcgatgcacaccgaggcggaggacgtgtcgctacggtttcgctcc
cagcgggcctacggtgttctcatggcaacaacatcacggaactcagccgacacgctccga
ctggagctggatgggggccgtgtccgtctcacggttaacctagactgtatcaggattaac
tgtaccgccagtaagggtccagagaccatctttgcgggggtggggctgaatgataatgag
tggcacacggtcagagtggtgcgtcgtgggaaaagcctcaaactcaccgtcgacgacctg
caacctgtagaaggtcagatggcaggcgaccacacccagctggagttccacaacgtggag
acaggcattgtgacggagaagcgcttcatgcccgctgtgccctccaacttcatagggcat
ctgcagggcctcaccctcaacgggatgccttacatagacctctgtaagaatggtgacatc
gactattgcgaactgaacgctgtgattggttataagagcatcgtggcggacccggttacg
ttcaggtcacggtcgagctacgtgaccctgcccacgctccaggcgtactactccatgcac
ctgttcctccagttcaaaaccacctcacctgacggactcgtactctacaacagaggagac
ggaaacgacttcatagtggtggagctggtcaaaggctacctccactatgtgtccgacctg
gggaatggggcacacctgatcaaagggaactccaactctcctctgaatgacaaccactgg
cacaatgtgctcatatccagagacaccaacaacctgcacactgttaagatagataccaag
gtcactacacagaccactatgggggccaagaacctggatctcaaaggtgacctgtacgta
gggggggtggctaaggagatgtatagggaccttcccaagctcgtccactcccgggaaggc
ttccagggttgcttagcaactgttgaccttaacggccgactacccgacctgctggccgat
gctctagctaccaccggacaagtggagaggggctgtgaaggtacacacacacacacaggt
cccagtactacctgtcaggaagactcttgctccaatcagggcgtgtgtttgcagcagtgg
gagggatttagctgtgattgcagtatgacatcattcggaggaccgctctgcaatgacgcg
gggaccacgtatatctttggtcgtgatgggggtgtgattgtgtacacctggcctcctaac
gagcgccccagtacacgggctgaccggctcgcgctgggcttcagcacacagcagaaacac
gctaccctgctacgggttgacagcgcctcgggactgggggactacctacagctacagata
gataaaggaaatattagggtagtgtttaacgtgggaacagatgacatcaacattgaagag
actgctaaatccgttaatgatgggaagtaccacatagttcggtttacccgcagcggaggc
aacgcaaccctgcagctggacgacctgccaatcatagagcgttacccctcaggcaacatt
gataacgagcgcctggccatcgctagacagagaatcccctatcgactcggtcgagtagtt
gacgattggctattcgacaaaggccgccagctgaccatcttcaacagccagacgacggtg
acggtaggaagaggaaaggaagcaggtcagttccagggtcagatggccggtctctactac
aacggactgaagatactcaacatggccgccgaaggacacgcccacatccgcctggagggc
agcacgcgattggttggggacatgccctcctccatcacgccccaatccagcgctgccgcc
ggggcaaaccgatcagaccccgccgccaatgccggcgacatcaccacgacaaccgccaca
aacaggaagcaaggaggaggaactacgcagcagtcaacagacgacctgctggtggcatca
gctgagtgtcccagtgatgacgaggacattgacccatgtgaccccagctctgcagcccac
ccccctctcccggaggtcaagccgttcccagggacatcagagggagtgagggagtccagc
agcaccaccggcatggtggtgggcatcgtggcagccgccgccctctgcatcctcatcctg
ctctacgccatgtacaagtaccgcaaccgcgacgagggctcgtaccacgtggacgagagc
cgcaactacatcagtaactctgccacccagcctaacggcagcaccaaggacaagccgctg
ggcatcgccaagatctccaagaacaagaagaacaaagacaaggagtactacgtgtga
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integrated database retrieval system
