Oncorhynchus tshawytscha (Chinook salmon): 112224292
Help
Entry
112224292 CDS
T05605
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112224292 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112224292 (msh2)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112224292 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
112224292
NCBI-ProteinID:
XP_024243543
LinkDB
All DBs
Position
LG25:complement(15118043..15139716)
Genome browser
AA seq
928 aa
AA seq
DB search
MAVQPKQSLSMDAAAEHGFLTYYFSMPEKPDTTFRVFDRGDYYTVHGTEALFAAKEIFKT
NGVIKTLGSGSRKLESVVLSKTNFEALVRDLLLVKQYRVEVYRNQSKTKDHSWQLEYKAS
PGNLSQFEEVLFGGAEGRGADSAGVVAVRLAVGGDGQRVVGVGYVDASLRTMGVCEFLDG
ETFCNLEALLVQLSPKECLLPQGDNTDNIRQVVQRGGVLLSDRKRTEFSSKDMTQDLNRL
LRTRKGEANACNVLPELDKQVAMSCLAAVVRYLELLSDQSNFSSFSLTTLDLSQYMRLDN
AAVQALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLDLVE
CLVNDGEARQTLQDDLLRRFPDLHRLSKKFHRLSATLQDCYRGYQAVGQIPALLLALEKH
QGSHQMLLEAVFISPLRDLQADFIKYQEMIETTLDMNQVEHHEFLVKASFDPVLSELREK
MDTLENSMQSVLNSAARELGLDAGKTVKLECNSVLGYYLRVTCKEEKSLRNNKTFTTLDV
QKNGVRFTNSKLSSLNEDYTRNREEYEEAQNAIVKEIISIAAGYVDPLQSLSDVIAQLDA
VVSFSVASVSAPIPYVRPRLLAADRRCLELKQARHPCLESDADTAFIPNDISFIQGEQSF
YIITGPNMGGKSTFIRQVGVISLMAQIGCFVPCENAELSMIDSCLCRVGAGDSQLKGVST
FMSEMLETAAILRAATKNSLIIIDELGRGTSTFDGFGLAWAISEHIASKIGCFCLFATHF
HELTALATHHPTVRNLHVTALTTQHTLTMLYRVKPGVCDQSFGIHVAELACFPPAVVAMA
KQKAAELEEFQEEPSGEEGPEAKKRRSDKREGEVLIQSFLEKVKSLPAVTMTDQEVKAEL
RAMKQELVAHNNAYITELLARSAPIHTT
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacagagcttgtccatggacgctgctgccgaacatggcttcctt
acctactacttttccatgccagagaagccagacaccactttcagggtcttcgaccggggt
gactactacacggtgcacgggaccgaagcgctgttcgccgccaaggagattttcaagacc
aacggagtcatcaagaccctgggctcaggtagccgcaagctggagagtgtggttctcagc
aagacaaactttgaggctctggtcagagacctactgctggtgaaacaatacagagtggaa
gtctacaggaaccaaagcaaaaccaaggatcacagctggcaactggagtacaaggcgtct
ccagggaatctgagccagtttgaggaggttctatttggcggggctgagggaagaggggct
gactcagcgggggttgtggccgtacggttggctgtcggtggtgacggacagcgcgtggtg
ggcgtgggctatgtggacgcgtccctaaggaccatgggagtgtgtgagttccttgatgga
gagactttctgtaacctggaggctctgcttgtgcagctgagccctaaggaatgtctgcta
ccacagggtgacaacactgataacatacgacaggtggtgcagcgtggcggtgtgttgctg
tcagacagaaagagaacagagttcagtagtaaagacatgacccaggacctcaaccgactg
ctacggaccaggaaaggggaggccaatgcctgcaacgttctgcctgaactagacaaacag
gtagctatgtcatgcttggcagcagtggttcgttacctggagttgctgtctgaccaatca
aacttcagctccttcagcttgacgacccttgacctgagtcagtacatgaggctggacaac
gctgctgtacaagccctcaacctatttcagggttctcccgatgacaccagtggagcccac
tcattggccgggcttctgaataagtgccgcacccctcagggccagcgattggtcaaccag
tggatcaaacagccactcatggacaagaacaggattgaggagagactggacctggtagag
tgcctcgtgaatgacggtgaggccagacagactcttcaggacgatctgttgcggcggttc
ccagatctccaccgcttgtccaaaaagtttcaccggctctcggcaacactgcaggactgt
taccgcggttaccaggccgtgggccagatccctgcacttctgttggctctggagaaacac
caaggaagtcaccagatgctgttggaggccgtgttcatctctcctctcagagacctgcag
gctgactttatcaagtaccaggagatgatagaaactacactggatatgaaccaggtggag
caccatgagttcctggtgaaggcatcgtttgacccggtgctctctgagctgagggagaag
atggacacactggagaacagcatgcagagtgtactgaacagcgcagcacgggaactgggt
ctggatgctggtaagacagtgaagttggagtgtaacagtgtgttggggtattacctgagg
gtgacctgtaaagaggagaagagtctgaggaacaacaaaacgttcacaacgctagacgtc
cagaagaatggagtccgtttcaccaacagtaagctgagttctttgaatgaagactacacc
aggaacagagaggagtatgaggaggctcagaacgccatcgttaaggagatcatcagcatc
gccgcgggttacgtggatcccctgcagtcgttgagtgacgtcatcgcccagctggatgcg
gtggtcagcttctctgtggcatcagtctctgctcccatcccctacgttaggccacgcctc
ctggctgcggaccgcaggtgcctggagctcaaacaggccagacacccctgcctggagtca
gacgcagacacagccttcatacctaatgatatatccttcatacaaggggagcagagcttc
tatatcatcacaggtcctaatatgggcgggaagtctaccttcatcaggcaggtgggcgtg
atctctctgatggctcagattggctgctttgtcccctgtgagaatgcggagctaagcatg
attgacagctgtctgtgccgtgtgggggcgggggatagccagctcaagggcgtttctaca
tttatgtcagagatgctggagactgcagctattctccgcgctgccacgaagaactctcta
ataataatcgatgagttgggtcgcggaacatctacattcgatggctttggtctggcctgg
gccatcagtgaacacatcgcctcgaagattggctgcttctgtctgtttgccactcacttc
catgagcttacggcgttggccacacaccaccccaccgtccgcaacctgcacgtcaccgct
ctgaccactcaacacacactcaccatgctctacagggtcaaaccaggtgtgtgtgaccag
agttttgggatccatgtggcggagttggcgtgtttcccgccggcggtggttgccatggca
aagcagaaggctgcagaactggaggagtttcaggaggagccgagtggggaggaggggcca
gaggccaagaaacgacgcagcgataaaagggagggagaggtattgatccagtcgtttctg
gagaaggtgaaatctctgccggcagtcaccatgactgaccaggaggtgaaggcggagctt
agagccatgaagcaggagcttgtcgcccataacaacgcttacatcacggagctcctggca
cgctccgcccctatccacacaacctga
DBGET
integrated database retrieval system
