KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112224309
Entry
112224309         CDS       T05605                                 
Symbol
ptcd1
Name
(RefSeq) pentatricopeptide repeat-containing protein 1, mitochondrial
  KO
K17710  pentatricopeptide repeat domain-containing protein 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:otw03016]
    112224309 (ptcd1)
   03029 Mitochondrial biogenesis [BR:otw03029]
    112224309 (ptcd1)
Transfer RNA biogenesis [BR:otw03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    112224309 (ptcd1)
Mitochondrial biogenesis [BR:otw03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    112224309 (ptcd1)
SSDB
Motif
Pfam: PPR_2 PPR_3 PPR_long PPR PPR_1 Ice_nucleation
Other DBs
NCBI-GeneID: 112224309
NCBI-ProteinID: XP_024243565
LinkDB
Position
LG25:15628114..15636293
AA seq 731 aa
MLQCVSRSCLRNGRSIVDYVVRYGSTQTARGLSSMGSGSTVRAPRSWSVHPVTDINRRAF
TGSVSVSSRRTRDVQESPTAPARMGRAGSDLGVEDFGSLSADFSSRRAFRKTTPELQDML
YREERQAAGQEEEREPEVFRSRTGRRNTQYWYFLQCKRLIKENKLSEALSMFQREMLEGE
RLPPEEYNYTVLIGGCGRAGHLKHAFKLYNDMKKRGLVPSDATYTALFNACAESPRKQAG
LQQAIHLEQELRRKNHPLSDITYHALLKTHALTNHLRACLHTLRDMLQAGHAVTQETFHF
LLMGCVRDRDTGFRQALQVYRQMLRMGIRPDVQNYNLLLRAARDCGIGNPAVASALLLTS
DCGQEGQAVKVRGQGSAPLDVDALESQLFTQHPDNDLSHHNNDATHCSNDPSNHSNDPSN
ILSHHSDLDSSVVAPITTQLVMVRKGGEQEAPIGSLPSLSGTSSHPPNLLDLSVGRAKEG
GVVSLGVVSGMFDRLALMGGAQGFLDKMATAGLCPDIRTLTLLADTMEPGIQSLHSLLAV
AKQHGVKLDAAFYNSVIRRAARAGDLQEAKAVMCAMQERRVRADVRTYGSLALGCNRQTD
ALQLLGDMQAAGVQPSVQVFSALIGCASRRLDYVYLRLVLRAMREHNVPPNDIIITQLEH
ASQYPPNYNQYKFRNTYLSQIDGFRGYYHQWLTTMPAQETGGPERVHPAETRQDGHQQAA
AAVRRHRKQHS
NT seq 2196 nt   +upstreamnt  +downstreamnt
atgttgcagtgtgtgtctcggtcgtgtttgaggaacgggagaagcatcgtagactacgtc
gtcagatacggctctactcagacagcacgaggtctgtcgagcatgggctccggtagcact
gtgagagctccacgttcctggtcggttcacccggtaacggacatcaaccgaagagccttc
acagggtctgtgtcggtgagttctagaagaaccagggatgtccaggaatcaccgaccgct
cccgcccgcatgggccgggctgggagcgacctgggcgttgaggacttcggatctctttcc
gctgatttttcctccagacgggccttccggaagaccaccccagagctgcaggatatgttg
taccgggaggagaggcaggcggccgggcaggaggaggagagggagccggaggtcttcaga
tctaggactggtcggaggaacacacagtactggtacttcctccagtgtaaaagactcatc
aaggagaacaagctgtctgaggccctgtccatgttccagagggagatgttggagggagag
agactcccacctgaggaatataactacactgtcctgataggaggctgtgggcgagcagga
catctcaaacacgccttcaaactctacaacgacatgaagaagagaggtctggttcctagc
gacgccacctacaccgctctgttcaacgcctgtgccgagtcaccacggaaacaagccggg
ctgcagcaagccatccacttggagcaggagctgcggcggaagaaccatcccctcagtgac
atcacataccatgccctgctgaagacacacgccctcaccaaccaccttcgagcctgttta
cacacactacgggacatgctacaggctggtcatgcagtaactcaggagaccttccacttc
ctgctgatgggctgtgtgagagaccgagacactggcttcagacaggccctgcaggtgtat
cgtcagatgttgaggatggggattcgtcccgacgtccagaactacaacctgctgctccgc
gcggctagagattgtgggataggtaaccccgccgtggcctctgccctgctgctgacctct
gattgcggccaggaaggtcaagcggtaaaggtcaggggtcaggggtcggctccgctggac
gtcgacgctctggagagtcaactgttcacacaacaccccgacaacgaccttagtcaccat
aacaatgacgccactcactgtagcaatgaccccagtaaccatagcaatgaccctagcaac
atcctcagtcaccatagcgacctggacagtagtgtggtcgccccgataacaacccaactg
gtgatggtgaggaagggaggagagcaagaggctcccattggctctctccccagtctgtca
ggaaccagttcccacccccccaacctgctggacctatcagtgggcagggctaaagagggg
ggtgtggtctcgcttggtgtggtgagcggaatgttcgataggctggcgctgatgggcggg
gcccagggcttcctggataagatggccactgcggggctctgcccagacatcagaactctc
acactattagctgacaccatggagcccggcatccaatcactgcacagcctgctggcggtc
gctaagcaacacggtgtgaagctggacgcagcgttctacaacagtgtgatccgcagggca
gcacgtgctggagacctacaagaggctaaggcggtgatgtgtgcgatgcaggaaagacgt
gtgcgtgcggatgtacggacgtacggcagtctggctctgggctgcaacagacagaccgat
gccctacagctgctgggggacatgcaggcggcgggggtgcagcccagtgtgcaggtgttc
tctgctcttattggctgtgccagcaggaggctggactatgtgtatctgaggctggtgctt
agagccatgagggaacacaacgtcccacctaatgacatcatcatcactcagctagaacac
gcctcccagtacccgcccaactataaccagtataagtttaggaatacctacctgtctcag
attgatggtttccgtggctactaccaccagtggctgaccaccatgcccgcccaggagaca
ggaggacctgagagagtccacccggcagagacgagacaagatggacatcagcaggcagca
gcagcagtaagacgacaccgcaagcaacacagctga

DBGET integrated database retrieval system