Oncorhynchus tshawytscha (Chinook salmon): 112224420
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Entry
112224420 CDS
T05605
Symbol
ercc4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112224420 (ercc4)
03460 Fanconi anemia pathway
112224420 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
112224420 (ercc4)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112224420 (ercc4)
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
112224420 (ercc4)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
112224420 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
AmiA-like
Motif
Other DBs
NCBI-GeneID:
112224420
NCBI-ProteinID:
XP_024243724
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All DBs
Position
LG25:22001637..22008646
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AA seq
912 aa
AA seq
DB search
MYALVVIFLQLMICREMAGQLLEFETEMFLSLFGSDGLLVTAEGMGIDRILLQFMRVYSE
EGSLVLLLNTTTPEQEFFTEQLRAEGVSHLPRTVTSDVQSTERYEVYTQGGVLFVTSRIL
VVDFLTDRIPAHLISGILVYRAHKIIESCQEAFILRLFRQKNKTGFVKAFTDKATSFSSG
FCQVERVMRNLFVKKLFLWPRFQASVNSVLDRHKPEVVELHVSLTPAMRAIQSSVLDIMN
ACLKELKRYNPTLEAEDLSLENTLGNAFEKTIRHYLDPLWHQLGAKTKSLVQDLKILRTL
LLYLTQYDCVTFLNLLESLRSSQKNFGSNSGWLFLDSSTSMFINARSRVYCIPESKKKLK
VGADTEKQQSTSEVKRVLVLEQNPKWEALTEVLQEIEKENKSSELKPGHILICASDDRTC
AQLHEYISRGSDSXLNRLYARTIGKRDALFDPDAHKQQGQSWAKKQQPEKETKGKKAKGK
AATKPNSKSKKRPSLTLTQMVGNREGDEGEVMGSSGDEGGLLEKEEEEELKLDLSSDAYY
GVLKEPLTVIHPLRGCTDPYSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKASRPGKPLR
VYFLIYGGSTEEQRYLTGLAKEKQAFEHLIREKATMVVPEEREGREDTNLDLSRSQEPAY
STTNTRKAGGQEQPKEPSRVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTADTCV
ERKSVSDLIGSLQSGRLYTQCLSMTRYYRKPVLLIEFDSAKPFSLVARTDFRQEISANDV
TSKLTLLTLHFPRLRILWCPSPHATAELFQELKKGRPEPDAAAAQAITAESDTVAESADL
FNPGPYDFLLRMPGVNAKNYRALVKHADSLAHLAKISQERLAQILGHAGNGKSLYEFLHN
TVDIPAPAQKSK
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcacttgtggttattttcttacaactgatgatatgcagggagatggctggtcaa
ctacttgaatttgagacggagatgttcctgagtttgtttggctcggacgggctgctggtg
actgcggagggcatggggatagaccgcatcctgctgcagttcatgcgggtgtactccgag
gaggggagtctggtgctgctgctgaacactaccacgcccgagcaggagttcttcacagag
cagctgcgagctgagggagtgagccacctgccccggacagtgaccagtgatgttcagagt
acagagcgctacgaagtttatacacagggaggggtcctgtttgtcaccagccgtatccta
gtggtggacttcctcactgacaggatacctgcacacctcatctcgggtatactggtgtac
cgggctcataagataattgagtcttgccaggaagccttcatcttgagacttttcagacag
aagaataagacaggcttcgtcaaggccttcacagacaaggccacatccttctcctcaggc
ttctgtcaggtggagagagtcatgaggaacctctttgtcaagaaacttttcctctggccc
aggttccaggcgtcagtgaactcggttttggacaggcacaagccagaggtggtggagctg
catgtgtctctgaccccggccatgagggccatccagagctctgtcctggacatcatgaac
gcctgtctgaaggagctgaagcgctacaaccccacgctggaggcagaggacctctccctg
gagaatacccttgggaatgccttcgaaaagaccatccgtcactacctggaccctctgtgg
caccagctgggagccaagaccaagtctttggtccaggacctgaagatcttacgtaccctg
ctgctctacctcacccagtacgactgtgtcaccttcctcaacctcctcgagtcactccgc
tccagccagaaaaactttggaagcaactctgggtggttattcctggactccagcacctcc
atgtttattaacgccaggagtcgggtgtactgcattcctgagtccaagaagaaactcaag
gtgggagctgacacagaaaaacaacaaagcacttcagaggtgaagagggtgctggtgctg
gagcagaacccaaagtgggaggctctgacagaggtgctgcaggagatagagaaggagaac
aagagctctgaactcaaaccaggccacatcttgatctgtgccagtgatgacagaacctgt
gctcaacttcatgagtacatcagtcgtggctcagactccntactcaatagactctacgct
cgcaccattggcaaaagagatgccctgttcgacccagacgcacacaaacaacagggccag
agttgggccaagaaacaacagcctgagaaagagaccaaaggaaaaaaagccaaagggaag
gcagcaaccaagccaaactcaaagagtaaaaagaggccatctctgaccctgactcaaatg
gttggcaacagagagggggatgagggagaagtgatgggcagcagtggggatgagggaggc
ctgttggaaaaggaggaggaggaggagctaaagttagacttgtcgtctgacgcctactac
ggtgttctgaaagagccattgactgttatccaccctctgaggggttgcactgacccctac
agtctgacgcgggtactgcatgaggtggagcccagttttgtggtgctttatgacgccgag
ctcagctttgttcgtcagctggagatttacaaagcctccagaccggggaaaccactgagg
gtgtacttcctgatctatggtggctccactgaggagcagaggtacttgactggtctggct
aaagagaaacaagcctttgaacacctcatcagggagaaggccactatggtagttcctgag
gagagagagggaagagaagacaccaacctggatctgagcaggagtcaggagcctgcttac
tctactaccaacacacgcaaagcggggggccaggagcagcccaaggagccgtcccgtgtg
attgtggacatgcgtgagttccgcagtgagctcccttccctcctccaccgacgcggcctg
gacatcgagcctgtcaccctagaggtgggcgattacatcctcactgccgacacctgcgtg
gagcgcaagagcgtcagtgacctgattggctcgcttcagagcggacgcctctacacccag
tgcctgtccatgacgcggtactaccggaagcccgtcctgctgatcgagttcgactcggcc
aagcccttttccctggtggcccgcaccgacttccgccaggagatctcagctaacgacgtc
acctccaagctgaccctcctcaccctgcacttcccccgcctcaggatcctttggtgcccc
tccccacacgccaccgcagaacttttccaggagctgaagaaaggtcgacccgagccggat
gccgccgcggcccaggccatcactgccgagtcggacacggtggcagagtcagctgacctc
ttcaaccctgggccatacgacttcctgcttcggatgccaggggttaatgcgaagaactac
agggctctggttaaacacgcagatagcctggcacacctagccaaaataagccaggaaagg
ctagcacagattctggggcatgctggcaatgggaagtcgctctatgagttcctgcataat
actgtggacatccctgcccctgcacagaaaagtaaatag
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