KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112224460
Entry
112224460         CDS       T05605                                 
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
  KO
K10858  DNA mismatch repair protein PMS2
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03430  Mismatch repair
otw03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    112224460 (pms2)
   03460 Fanconi anemia pathway
    112224460 (pms2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otw03400]
    112224460 (pms2)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     112224460 (pms2)
SSDB
Motif
Pfam: MutL_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 112224460
NCBI-ProteinID: XP_024243791
LinkDB
Position
LG25:complement(22995017..23004469)
AA seq 882 aa
MTDASSEPAGIIKAIDRHSVHQICSGQVVLTLATAVKELVENSIDAGATNVDIKLKDSGT
ELVEVSDNGKGVEEANFEGLTLKHHTSKLKDFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHEAAQVGTKLVFDHNGHLTQRSPHPRQQGTTVSLSQLFYTLPVRHKEFQRNIKKEYTK
MIHILQSYCIVSTGVRITCTNQTGQGKRTPVLCTSGRQSMRDNIGAIFGPKQLQSLLLFQ
QLSPTDNIKEDYGLSNADLPKDLFAISGFVSRGDHGVGRSATDRQFFYINNRPCDPSKVS
KVVNEVYHTFNRHQYPFVALNITVASECVDVNVTPDKRQIFLQEEKLLLAIMKSSLIAMY
ETGVNKISLNHMSFSTTSKHTLQDSYRPAEPPSDMEGCQVPSSETAPEAGDDSESVIPSP
QSSLNLAGLKAAFSMHNSPGSGSKSSTAKAANTGPTQKKLQSFFGGSDKSQNTHGPSLQS
PLKISRGAVKCSPVGRSVLEGFRYGMTPDSDVDSGRESVLSEHSSPTATPESLCATTGSE
FNSPDNIVDDEPIIKSEALNEPFNEERTVAKHFDRPIEPRISEMSEEMSFSPTAKKAKLE
DGQFSLEYKTTHSAGSEGSSGSNVDAPVCVQKRTVPLQFSVQELFGRVRRLQEQRREKAE
DRLRYRRFRAKISPGENQSAEDELKKEICKDSFKDMEIIGQFNLGFIITKLNSDIFMIDQ
HATDEKYNFEMLQQHTALQGQRLIVPQNLNLTAVSENVLMENLEIFRKNGFDFLIDEEAQ
VMERVKLVSLPTSKNWTFGPGDIEELIFMLSDSPGVMCRPSRVRHMFASRACRKSVMIGT
ALSTSEMKKLVVHMGEIEQPWNCPHGRPTMRHLANLNIISED
NT seq 2649 nt   +upstreamnt  +downstreamnt
atgacggatgcaagctctgaaccagctggaatcatcaaggccattgacaggcactctgtg
catcagatctgctctggacaagttgtgttgaccctggctacagctgtcaaggaactggtt
gaaaacagtattgatgcaggggccaccaatgttgacattaaattgaaggacagcggaaca
gagcttgtggaagtgtctgacaacggcaaaggagtggaagaggctaattttgaaggacta
accttgaagcaccacacatcgaagctgaaggatttctctgaccttatccacgtggaaaca
tttggcttccgaggggaagccctcagctctctttgtgccctcagtgacctcagtgttgtg
acctgtcatgaagctgcacaagtgggcaccaagctggtgtttgaccacaacggtcacctg
acccaacggtcgccccaccccaggcagcagggcaccacagtcagcctgtcgcagctcttc
tacaccctgcccgtccgacacaaggagttccaacgcaacatcaaaaaggaatacaccaag
atgattcacatcctccagtcctactgcatcgtctcaacaggggttcgtatcacctgcacc
aaccagacgggacagggcaaacgcaccccggtcctctgcaccagcggcaggcagagcatg
agagacaacattggagccatatttggccccaaacagttgcagagtctgcttctattccag
cagctctcgccaacagacaacattaaggaggattatggactgagtaatgcagacctaccc
aaagacctcttcgcaatctccggttttgtgtcgcgaggggatcatggtgtagggagaagt
gccacagacagacagttcttttacatcaacaaccgcccgtgtgatccttctaaggtctcc
aaggttgtgaatgaagtgtatcacacctttaacagacatcagtatccgtttgttgcattg
aacatcactgttgcctcagagtgtgtggatgtgaacgtcactccagacaagcgtcagatc
ttcctccaggaggagaaactcctgctagccatcatgaagagctctctcatcgccatgtac
gagactggagtcaacaagatcagcctcaaccacatgtccttctccaccaccagtaaacac
actttacaagattcctacagaccagcagagcctccatctgatatggaaggatgccaggtt
ccatcatctgagacggctcctgaagctggagatgattcagaatctgttataccaagcccc
cagtcttctctcaacttggctggattgaaggctgctttctccatgcacaacagcccaggc
agtgggtccaagtcgagcactgctaaagctgctaacactggtccaacccagaagaaactg
cagtctttcttcggaggctctgacaagagtcagaacacacacgggccaagtttacaatct
cctttgaaaatcagtcgaggtgcagtgaaatgttcccctgtggggaggtctgtgctggag
gggttcaggtatggaatgacgccggacagcgacgtagactctggcagagagagcgtcctg
tcggagcacagctcccccacagccaccccagagagtctctgtgctactacagggtcagag
ttcaactcaccagacaacatagtagatgacgaacccattataaaaagcgaggcactcaat
gaacctttcaacgaggaacgcacagttgctaagcacttcgaccggccgattgaaccacgt
atttcagagatgtctgaggaaatgagcttcagtcccaccgccaagaaggccaaactagag
gatggtcagttctccttagagtacaagaccacacattcagccggttctgaaggatcctct
gggtctaatgtggacgcaccagtctgtgtacagaagaggacagtgccactgcagttctct
gtacaggagctgtttgggagggtgagaaggcttcaggaacagcgtagagagaaggctgaa
gacaggctgcgctacagacgcttcagagccaaaatcagccctggagagaatcagagtgct
gaggatgagctgaagaaagagatatgcaaagacagttttaaggacatggagataatcggc
cagtttaacctgggcttcatcataactaagctcaactctgacatcttcatgatagaccag
cacgccaccgacgagaagtacaactttgagatgcttcaacaacacactgcactgcaagga
cagagactcattgttccacagaatctcaaccttacagcagtcagcgagaacgttctcatg
gagaaccttgagatcttcagaaagaatggctttgatttcctcatagatgaggaggcccag
gtgatggagcgggtgaagctggtgtccctgccaaccagtaagaactggacatttggtccg
ggggacatcgaggagctcatctttatgttgagtgacagcccaggggtcatgtgtcggccg
tctcgtgtcaggcacatgttcgcctccagggcctgcaggaagtcggtgatgatcggtact
gctctgagcaccagtgagatgaagaagcttgtggttcatatgggggagatagagcagcct
tggaactgtccacatggcagacccactatgagacaccttgcaaacttgaacatcatttca
gaagactga

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