Oncorhynchus tshawytscha (Chinook salmon): 112224460
Help
Entry
112224460 CDS
T05605
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03430
Mismatch repair
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112224460 (pms2)
03460 Fanconi anemia pathway
112224460 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112224460 (pms2)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
112224460 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
112224460
NCBI-ProteinID:
XP_024243791
LinkDB
All DBs
Position
LG25:complement(22995017..23004469)
Genome browser
AA seq
882 aa
AA seq
DB search
MTDASSEPAGIIKAIDRHSVHQICSGQVVLTLATAVKELVENSIDAGATNVDIKLKDSGT
ELVEVSDNGKGVEEANFEGLTLKHHTSKLKDFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHEAAQVGTKLVFDHNGHLTQRSPHPRQQGTTVSLSQLFYTLPVRHKEFQRNIKKEYTK
MIHILQSYCIVSTGVRITCTNQTGQGKRTPVLCTSGRQSMRDNIGAIFGPKQLQSLLLFQ
QLSPTDNIKEDYGLSNADLPKDLFAISGFVSRGDHGVGRSATDRQFFYINNRPCDPSKVS
KVVNEVYHTFNRHQYPFVALNITVASECVDVNVTPDKRQIFLQEEKLLLAIMKSSLIAMY
ETGVNKISLNHMSFSTTSKHTLQDSYRPAEPPSDMEGCQVPSSETAPEAGDDSESVIPSP
QSSLNLAGLKAAFSMHNSPGSGSKSSTAKAANTGPTQKKLQSFFGGSDKSQNTHGPSLQS
PLKISRGAVKCSPVGRSVLEGFRYGMTPDSDVDSGRESVLSEHSSPTATPESLCATTGSE
FNSPDNIVDDEPIIKSEALNEPFNEERTVAKHFDRPIEPRISEMSEEMSFSPTAKKAKLE
DGQFSLEYKTTHSAGSEGSSGSNVDAPVCVQKRTVPLQFSVQELFGRVRRLQEQRREKAE
DRLRYRRFRAKISPGENQSAEDELKKEICKDSFKDMEIIGQFNLGFIITKLNSDIFMIDQ
HATDEKYNFEMLQQHTALQGQRLIVPQNLNLTAVSENVLMENLEIFRKNGFDFLIDEEAQ
VMERVKLVSLPTSKNWTFGPGDIEELIFMLSDSPGVMCRPSRVRHMFASRACRKSVMIGT
ALSTSEMKKLVVHMGEIEQPWNCPHGRPTMRHLANLNIISED
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgcaagctctgaaccagctggaatcatcaaggccattgacaggcactctgtg
catcagatctgctctggacaagttgtgttgaccctggctacagctgtcaaggaactggtt
gaaaacagtattgatgcaggggccaccaatgttgacattaaattgaaggacagcggaaca
gagcttgtggaagtgtctgacaacggcaaaggagtggaagaggctaattttgaaggacta
accttgaagcaccacacatcgaagctgaaggatttctctgaccttatccacgtggaaaca
tttggcttccgaggggaagccctcagctctctttgtgccctcagtgacctcagtgttgtg
acctgtcatgaagctgcacaagtgggcaccaagctggtgtttgaccacaacggtcacctg
acccaacggtcgccccaccccaggcagcagggcaccacagtcagcctgtcgcagctcttc
tacaccctgcccgtccgacacaaggagttccaacgcaacatcaaaaaggaatacaccaag
atgattcacatcctccagtcctactgcatcgtctcaacaggggttcgtatcacctgcacc
aaccagacgggacagggcaaacgcaccccggtcctctgcaccagcggcaggcagagcatg
agagacaacattggagccatatttggccccaaacagttgcagagtctgcttctattccag
cagctctcgccaacagacaacattaaggaggattatggactgagtaatgcagacctaccc
aaagacctcttcgcaatctccggttttgtgtcgcgaggggatcatggtgtagggagaagt
gccacagacagacagttcttttacatcaacaaccgcccgtgtgatccttctaaggtctcc
aaggttgtgaatgaagtgtatcacacctttaacagacatcagtatccgtttgttgcattg
aacatcactgttgcctcagagtgtgtggatgtgaacgtcactccagacaagcgtcagatc
ttcctccaggaggagaaactcctgctagccatcatgaagagctctctcatcgccatgtac
gagactggagtcaacaagatcagcctcaaccacatgtccttctccaccaccagtaaacac
actttacaagattcctacagaccagcagagcctccatctgatatggaaggatgccaggtt
ccatcatctgagacggctcctgaagctggagatgattcagaatctgttataccaagcccc
cagtcttctctcaacttggctggattgaaggctgctttctccatgcacaacagcccaggc
agtgggtccaagtcgagcactgctaaagctgctaacactggtccaacccagaagaaactg
cagtctttcttcggaggctctgacaagagtcagaacacacacgggccaagtttacaatct
cctttgaaaatcagtcgaggtgcagtgaaatgttcccctgtggggaggtctgtgctggag
gggttcaggtatggaatgacgccggacagcgacgtagactctggcagagagagcgtcctg
tcggagcacagctcccccacagccaccccagagagtctctgtgctactacagggtcagag
ttcaactcaccagacaacatagtagatgacgaacccattataaaaagcgaggcactcaat
gaacctttcaacgaggaacgcacagttgctaagcacttcgaccggccgattgaaccacgt
atttcagagatgtctgaggaaatgagcttcagtcccaccgccaagaaggccaaactagag
gatggtcagttctccttagagtacaagaccacacattcagccggttctgaaggatcctct
gggtctaatgtggacgcaccagtctgtgtacagaagaggacagtgccactgcagttctct
gtacaggagctgtttgggagggtgagaaggcttcaggaacagcgtagagagaaggctgaa
gacaggctgcgctacagacgcttcagagccaaaatcagccctggagagaatcagagtgct
gaggatgagctgaagaaagagatatgcaaagacagttttaaggacatggagataatcggc
cagtttaacctgggcttcatcataactaagctcaactctgacatcttcatgatagaccag
cacgccaccgacgagaagtacaactttgagatgcttcaacaacacactgcactgcaagga
cagagactcattgttccacagaatctcaaccttacagcagtcagcgagaacgttctcatg
gagaaccttgagatcttcagaaagaatggctttgatttcctcatagatgaggaggcccag
gtgatggagcgggtgaagctggtgtccctgccaaccagtaagaactggacatttggtccg
ggggacatcgaggagctcatctttatgttgagtgacagcccaggggtcatgtgtcggccg
tctcgtgtcaggcacatgttcgcctccagggcctgcaggaagtcggtgatgatcggtact
gctctgagcaccagtgagatgaagaagcttgtggttcatatgggggagatagagcagcct
tggaactgtccacatggcagacccactatgagacaccttgcaaacttgaacatcatttca
gaagactga
DBGET
integrated database retrieval system