Oncorhynchus tshawytscha (Chinook salmon): 112224508
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Entry
112224508 CDS
T05605
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112224508 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112224508 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112224508 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112224508 (col1a1b)
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112224508 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
112224508
NCBI-ProteinID:
XP_024243872
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All DBs
Position
LG25:complement(25905646..25927897)
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AA seq
1460 aa
AA seq
DB search
MFSFVDIRLALLLSAAVLLARGQGEDDSGFGSCSLDGQQYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCADPIIPDGECCPICPDDSESEDPQLPERPQPEGPQGGDGPKGDDGP
EGVPGNDGVDGQPGLPGPPGPPGPPGLGGGVFSPQMHHGYDQKSSGGQAQMGQMGPMGPR
GLAGPPGNTGPPGHHGPPGEPGEPGGSGPMGERGAMGPHGKNGDNGEPGRSGRPGERGSA
GPQGGRGTPGTPGLPGIKGHRGFNGMDGAKGDGGPAGPKGEGGSPGSSGNSGAMGARGLP
GERGRPGPAGSSGARGNDGNSGPAGSNGPTGPSGAPGFPGGAGAKGETGPQGGRGSDGPQ
GSRGEPGNPGPAGAAGPSGAPGGDGQAGGKGSTGAAGISGAPGFPGTRGPAGPPGSGGGP
GPKGNHGEHGAQGPKGEPGVKGEPGSAGPGGPPGPSGEEGKRGARGEPGGAGGVGPPGER
GMAGMRGFPGSDGAAGGKGGPGERGANGPMGAQGATGEAGRPGEPGMPGSKGMTGSPGSP
GPDGKVGPAGITGNDGRSGPPGSSGARGQPGVMGFPGPKGPGGDNGKPGERGEAGAVGGL
GAPGKDGDSGAPGPQGPAGSQGEKGEGGPAGPNGFQGLPGTQGATGEPGKAGEQGGPGEV
GGPGPSGSRGDRGFPGERGGIGSAGPAGPRGANGSPGNDGARGESGAAGAPGGMGAPGLQ
GMPGERGSGGNSGAKGERGDGGPKGADGGPGKDGMRGMTGPIGPPGPTGAHGEKGEGGLG
GPPGPTGGRGSPGERGEHGAPGPAGFAGPPGADGQPGNKGETGNNGPKGEAGAPGPGGPV
GAPGPQGPAGNSGTKGTRGAPGPPGASGMPGPGGRVGPPGGSGAPGSAGPPGPAGKEGQR
GGRGETGNAGRPGEAGAAGPPGPSGASGSKGNDGPMGAPGTPGPGGIAGQRGIVGGPGGR
GPSGTAGIPGTAGEPGKQGPGGPVGERGSPGPMGPPGLSGAPGEAGREGSTGHDGVSGRD
GPPGPKGDRGENGNAGSPGAPGPPGAPGPSGASGKSGSRGESGPAGPAGPNGPAGGRGGL
GPAGARGDKGEAGEGGERGHKGHRGLNGMPGLPGPSGSPGESGPAGLNGPSGPRGPHGSS
GSTGKDGMNGLPGPIGPPGPRGRNGEMGAAGAPGSPGLPGPPGPAGGGFHVAPIYNQEKG
PDPMRGGGGYHYRADEPDMMNNRDMDVDTTLKSLSQKVENIRSPEGSQKNPARMCRDIRM
CHPEWKSGQYWVDPNQGSPLDAVQVYCNMETGETCVYPSQDTVPMKNWYTSKNIREKKHV
WFSESMDNGFQFQYGSEGSNPEDVNIQLTFMRLMSNEASQNVTYHCKNSIAYMDEATGNL
KKALLLQGANEIEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAP
MDVGAPDQEFGVEVGPVCFV
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgctgctcagcgcagcagtgctattggca
agaggtcaaggagaggacgatagcggattcggcagctgctcgttggacggccaacagtac
aacgataaggatgtatggaaaccagaaccctgccagatctgcgtctgcgacagcggaacc
gttatgtgcgacgaagtgatttgcgaggacacaaccgactgcgccgaccctatcatcccc
gacggcgaatgctgtcctatctgccccgatgactccgagagcgaggatccccagttacca
gaacgtcctcagccagagggaccacagggaggtgatggccccaagggtgacgatggtcct
gagggtgttccaggtaacgatggcgtggatggccagcctggcctgcccggccccccaggc
ccccctggacctcctggccttggcggcggagtcttctctcctcagatgcaccatggttat
gaccagaaatccagcggtggccaggcccaaatgggacagatgggccctatggggccccgt
ggtcttgctggcccaccaggcaacaccggtccccccggtcaccatggtccccctggcgag
cccggtgagcctggcggttctggtcccatgggtgaacgtggtgcaatgggcccccatggc
aagaacggagataatggtgagcctggcaggtctggtcgccccggtgagcgtggctccgct
ggccctcagggtggtcgtggaacccctggaactcctggcctccccggcatcaagggacac
agaggtttcaatggtatggatggcgccaagggagacggtggcccagctggccctaaggga
gagggtggttcccctggatccagtggcaactccggtgctatgggtgcacgtggtcttcct
ggtgagagaggccgccctggacctgctggctcttctggtgctcgtggtaacgatggtaac
tctggtcctgctggatctaatggacccactggcccatctggtgcccctggattccccgga
ggtgctggagctaaaggagagaccggtcctcaaggtggacgtggctcagacggaccccaa
ggatctcgtggagagcccggtaaccccggacccgctggtgctgctggaccctctggtgcc
cctggaggtgatggccaagcaggaggcaagggttccactggtgctgctggtatctctggt
gctcctggtttcccaggaactcgtggccccgctggaccccctggatctggtggtggaccc
ggccccaagggtaaccatggtgagcacggagcccaaggccccaagggagagcccggtgta
aagggagagcctggttccgctggtcccggtggaccccctggaccctctggtgaggaggga
aagagaggcgcccgtggtgagcccggtggagctggtggtgttggaccccctggagagcgt
ggtatggctggtatgcgtggtttccccggctctgatggagctgccggtggcaagggtggc
cctggtgagcgtggagccaatggaccaatgggagcccaaggtgccactggtgaggctggt
cgtcctggcgagcctggcatgcctggatccaagggtatgactggtagccctggtagcccc
ggacccgatgggaaagttggccctgctggtatcactggaaacgacggtcgctccggaccc
ccaggctcctcaggagccagaggtcagcctggagtcatgggattccctggacccaaagga
cctggtggtgacaatggcaagcccggtgagagaggtgaagctggagctgttggtggtctt
ggtgctcctggtaaagatggtgactctggtgctcctggaccccaagggcctgctggttct
caaggagagaaaggagagggcggccccgccgggcctaatggattccaaggtctgcctgga
actcagggagctactggtgagcctggcaaggctggtgagcagggtgggcccggtgaggtt
ggaggtcctggccccagtggatccagaggtgacagaggtttcccaggagagcgtggtggc
atcggatctgctggccccgctggaccccgtggagccaatggttctcccggtaacgatgga
gctaggggtgagagtggtgctgctggtgcccctggcggtatgggagccccaggtctgcag
ggaatgcccggagagcgcggctcaggcggcaactctggtgccaagggagaacgaggtgat
ggtggccccaagggagccgacggtggccctggaaaagacggcatgcgtggtatgactgga
cccatcggaccccctggacccactggtgctcatggagagaagggtgagggtggtctcgga
ggcccccctggccccactggaggtcgcggttcccctggtgagcgtggtgagcatggtgcc
cctggacctgctggattcgctggaccccctggtgctgatggtcagcctggcaacaaggga
gagaccggtaacaacggccccaagggtgaggctggtgctcccgggcccggtggacctgtt
ggtgctcccggacctcaggggcccgctggtaattctggtactaaaggaactcgtggtgca
cctggaccccctggtgcttctggtatgcctggtcctggtgggagagtcggtcctcctggt
ggaagtggagcccccggatccgcaggcccccccggccccgctggtaaagagggacagaga
ggtggacgtggtgaaactggtaatgctggtcgccctggtgaggctggagccgccggaccc
ccaggtccctcaggagcctctggatctaagggtaacgatggtccaatgggagccccagga
acccccggacccggaggtattgctggacagcgtggtattgtgggtggccccggaggaagg
ggacccagcggtactgcaggaataccaggaacagctggagagcccggtaagcagggacct
ggcggccccgtcggtgagcgtggctcccctggccccatgggaccccctggcttgtctggt
gcgcccggtgaagctggtcgtgagggttccactggtcacgatggtgtttctggtcgcgat
ggaccccccggccccaagggtgaccgtggtgagaatggtaatgctggttcccctggtgct
cccggacctcccggtgcccccggtccctctggtgcttctggcaagtctggtagccgtgga
gagtctggtcctgctggtcccgctggccctaacggtcctgctggtggtcgtggtggtctt
ggacctgctggtgctcgtggagacaagggagaggctggagagggtggagagagaggccac
aagggacacagaggtttaaacggcatgcccggtcttcctggaccctctggttcccctggc
gagtctgggcctgctggacttaacggaccttctggaccccgaggaccccatggttcttct
ggctccactggcaaagatggcatgaacggtctgcctggacccattggaccccccggaccc
cgtggtcgcaatggagagatgggagcagctggtgctcctggttctcctggtctgcccgga
cctccaggtcccgctggcggcggcttccatgtcgcaccgatctacaaccaggagaaggga
cctgaccccatgcgaggaggaggaggataccactaccgcgctgacgagcctgacatgatg
aacaaccgtgacatggatgtggacaccaccctgaagagcctcagccagaaggtggagaac
atccgcagccccgagggatcccagaagaaccccgcccgcatgtgccgtgacatcaggatg
tgccaccccgagtggaagagcggccagtactgggtggaccccaaccagggctctcctctg
gatgctgtccaggtctactgcaacatggaaaccggagagacctgtgtctatccatcccag
gataccgtccccatgaagaactggtacaccagcaagaacatcagggagaagaagcacgtc
tggttctcagagtctatggacaatggcttccagttccagtatggtagcgagggatccaac
ccagaagatgtcaacatccagctgaccttcatgcgcctgatgtccaacgaagcttcccag
aacgtcacgtaccactgcaagaacagcattgcctacatggacgaggccacaggcaacctg
aagaaggccctgctgctccagggagccaacgagatcgagatcagagccgagggcaacagc
cgcttcacatacagcgtcagcgaggacggctgcacgtcacatactggcacatggggcaag
acagtcatcgactacaagacatcaaaaacatctcgcctgcccatcattgacatcgctcct
atggacgttggtgcacctgatcaggagtttggcgtcgaagttggccccgtctgcttcgta
taa
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