Oncorhynchus tshawytscha (Chinook salmon): 112224578
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Entry
112224578 CDS
T05605
Name
(RefSeq) homeobox protein SIX2 isoform X1
KO
K19472
homeobox protein SIX2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112224578
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
112224578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeobox_KN
Homeodomain
HTH_3
HTH_NDX
Phage_mat-A
Motif
Other DBs
NCBI-GeneID:
112224578
NCBI-ProteinID:
XP_024243979
UniProt:
A0AAZ3SHV1
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Position
LG25:complement(28536229..28540718)
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AA seq
289 aa
AA seq
DB search
MSMLPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHR
GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRS
IWDGEETSYCFKEKSRSVLREWYTHNPYPSPREKRELAEGTGLTTTQVSNWFKNRRQRDR
AAEAKERYEENNENSNTNSHNPLTSSMNGNKTLLGSSDDDKTPSGTPDNTSSTPAMLIAS
NSGLQMHGLAPPPGPSAMPVSSHDSVHHHHSLHDTILNPMSSNLVDLGS
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgcttccaacttttggctttacgcaagagcaagttgcttgcgtctgcgaggtc
ctccaacagggtggaaacattgaacggctcgggcgctttttgtggtctttacccgcgtgt
gagcacctccacaaaaatgaaagtgttctcaaagctaaagctgtggtcgcattccacaga
ggaaatttcagagagctttataagatccttgagagccaccaattttcccctcacaatcac
ccgaagctgcagcagctatggctcaaagcgcactacgtcgaggcggagaagcttcgaggc
cgccctctcggggctgtgggaaagtaccgcgtccgcagaaagttccccctgcctcggtct
atctgggacggcgaggagacaagttactgtttcaaagagaaaagccggagcgtactcaga
gaatggtacacacataacccctacccttccccgcgagagaagagggagctcgccgaaggc
accgggttaacaaccacgcaagtcagtaactggttcaaaaacagacggcaaagagaccgc
gcggcagaagcgaaggaaaggtacgaggaaaacaacgaaaactccaacaccaacagccac
aacccattgacttcttccatgaatggaaataaaacacttttggggagctcagacgacgac
aaaacgccttcagggactccggataacacctcgtcgactccggctatgctcatcgcttca
aactcggggctgcagatgcacggcctagcgcctccacccgggcctagcgccatgccagtg
tccagccatgactctgtgcaccatcatcactcattgcacgatactatactgaaccctatg
tcgtctaacctggtcgacctcggctcttaa
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