Oncorhynchus tshawytscha (Chinook salmon): 112224656
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Entry
112224656 CDS
T05605
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2 isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
otw03009
]
112224656 (ddx21)
03036 Chromosome and associated proteins [BR:
otw03036
]
112224656 (ddx21)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112224656 (ddx21)
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Helicases
112224656 (ddx21)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
112224656 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Gly_acyl_tr_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
112224656
NCBI-ProteinID:
XP_024244111
LinkDB
All DBs
Position
LG25:35483185..35490617
Genome browser
AA seq
750 aa
AA seq
DB search
MPSKIIFETEDIGMEGEMDISAGSTTPKKIKEKKTKEGKKIKKQKTVVEEEPDCEPPAPK
KKKKKNKEKEDKTNGGAEVDVNSNAEESPLKDNTFHSNEESADNDKATEKKKKKKKKEKK
TDEKVIVNGVLPETPTLIAQTNGHTAATTPAQSIEDSDSGKETETPEQKEGAFSNFRISP
NTIKLLQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEKLQNDPDDK
KRGRAPKILCLAPTRELAIQVSKDFKDMTKKLSVTCFYGGSSYNPQLDAIRSGIDILVGT
PGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSETNPQTLLFS
ATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYS
GSHGRTIVFCETKKDANELSMNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATN
VAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQK
AGITFKRVGVPTANDIIKSSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGAVEALSAAL
AHISGATALEQRSLLNSDTGYTTMTMNCSQELQNIGSAWRGLKEQLGEEIDNMIRGMTFL
KGKMGVCFDVPADKVKEYQDAWQDGRRWQLSIATELPELEEKPRMGGDRGYGRSFGGQGG
GRGFRNGGGGGGNWRGGGSHKRSFSSAFDY
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaagattatttttgaaaccgaagacatcgggatggaaggtgaaatggacatt
agtgcgggcagtacgacacccaaaaaaataaaggagaagaagaccaaggagggaaagaaa
atcaagaaacagaaaacggttgttgaagaggaacctgactgtgaacctcctgctcccaag
aagaagaagaagaagaataaggaaaaagaggacaaaactaacgggggcgcagaagttgat
gttaacagcaacgcagaagaatcacctttgaaggacaacacatttcattccaatgaggag
tctgcagacaatgacaaagcaaccgagaagaagaagaagaagaagaaaaaggaaaaaaag
acagatgaaaaggtcatcgtcaacggagtgttgcctgagactcccacgctgattgcacaa
actaatgggcataccgcggcgacaactccagcacaatcaatcgaggactccgacagtgga
aaagaaaccgagacgccagaacagaaagagggagccttctctaacttcagaatctccccc
aacaccattaaactacttcaagcaagaggcatatcttacctctttgacatccaaacacaa
accttcaattctgtgtacgagggaaaggatgtgattggccaggcaagaacaggcactggg
aaaactttagcttttgccattccgctgattgagaaactccaaaatgacccagatgacaag
aagaggggcagagccccaaagattttgtgccttgcgccaaccagagaattggctattcaa
gtatccaaggatttcaaggacatgacaaagaaactgtctgttacttgtttctatggtggg
agctcctacaacccccaacttgatgcgatccgcagtggcatcgatatcctagtgggaact
ccaggtcgtatcaaggaccatctacagaataacaaactggacctgtctcaattgaagcac
gttgtattggatgaagtggaccaaatgcttgatatgggctttgcagaacaggtggaggag
atactgtctgcgtcttaccaaaaagactctgagaccaacccccagaccctgctcttctct
gccacatgcccatcatgggtgtatgatgtggcaaagaggtacatgaggccaacctatgag
catgtggacctcattggcaaaaagacccagaaagctgccaccacagtagagcacctggcc
atagcgtgtcactggtcccagagggctgcagtcattggggatgtggtgcaggtttacagc
gggagccacggccgcaccatcgtcttctgtgagaccaagaaggatgccaacgagctgtca
atgaatgcctccataaaacagagttcccagtcacttcatggggacattcctcagaagcag
agggagatcaccctgaaaggcttcagaagtggcaccttcgaggtcctagtggccaccaac
gttgctgcccgcgggttggacatcccagaggtagacctggtcgtgcagtgctcaccccca
aaggatgtggagtcctacattcaccggtcaggtcgaactggtcgggctggcaggactggc
gtctgcatctgtttctaccaacgcaaagaggaagaccagctccgatatgtagagcagaaa
gcaggcattacatttaagcgagttggagtgcccactgccaatgacatcatcaaatcgtcc
agtaaagacgcagtgaggtttttagactctgtgcctccccaagccattgagtatttccgc
gtgtctgctaccaagctgattgaggagcgtggggccgtggaggccctgtctgccgccctg
gcacacatatcaggagccactgccttggagcagaggtccctcctcaactctgacacgggc
tacaccacaatgacaatgaactgctcccaggagctgcaaaacattggctccgcctggcgt
ggtctgaaggagcaactgggagaggagattgacaacatgatccgggggatgaccttcctc
aagggcaaaatgggagtctgttttgatgtcccggctgacaaggtaaaggagtaccaggat
gcctggcaggatggtagacgttggcagctgtcaatcgccacagagcttcctgagctggag
gagaaaccgcgcatgggtggtgaccgtggatatggacgttccttcggaggacagggaggt
ggccgtggcttcagaaacggcggaggaggcggcggcaactggagaggtggaggcagtcat
aaacgcagcttcagcagtgcgtttgattattaa
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