Oncorhynchus tshawytscha (Chinook salmon): 112224696
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Entry
112224696 CDS
T05605
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1 isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
112224696
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112224696
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
112224696
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
112224696
NCBI-ProteinID:
XP_042161686
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Position
LG25:complement(40774396..40989122)
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AA seq
1246 aa
AA seq
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MLVIGHGNISLGIGSLRIMPKGKHSYYPDSPSIRISKMDVIIPFSPDVPCDSNGQRMWWA
FLASSMVTFFGGLFIILLWRSLNYLWTVCCHCNTKKKNVHRVHHPISHGDGVKHTKETVA
ALSEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALVIYFIDSSDPIESCQNFYK
DFTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGL
RFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENF
QNSQSLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELI
GNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLE
LEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVIS
IKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTM
LANLFSMRSFIKIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPTICELCYVKLKLLLI
AIEYKSDIRESSTLINPGNHVKMQEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIK
KCGCKRSKNNYNGYIKSMEEEQQSAVSPKKKQGNGNTRNSPNGSPKMMRHDPLLMPGNEQ
IENMDVNVKKYDSTGMFHWCQSKDIEKVILTRSEAAMTVLSGHVVVCIFGDAKSALVGLR
NLVMPLRASNFHYHELKPIVFVGSLEYLKREWETLHNFPKVSILPGTPLSRADLRAVNIN
LCDMCVILSANQSNIDDASLQDKECILASLNIKSMQFDDSIGVLQATSQGFTLPGMDRSS
PENSPVHGGLVRQASITTGANVPIITELAPLVKAAGKVLPVISFSQDTSSGINIHIITEL
VNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVT
GGATPELEGLLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCK
ALKTYNMLCFGIYRLRDAHLNTQSHTSQCTKRYVITNPPYGFELVPSDLIFCLMQFDHNA
GQSQASLTHSSHSSHSSSKKSSSVHSIPTTNRTNRAKSRDSRDKQKMNRMGQEKTCFIDE
PENAAYPRKSHSSHTANHQVNHQVNQNPYKSTNNLIPSIREVEGEY
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgctagttataggacatggcaacatatccctgggcatcggtagcctcagaataatgcct
aaaggtaaacatagttactatccggactctccctctatccgcatatccaagatggatgtg
atcatcccgttctccccagatgtgccctgtgatagcaacgggcagcgcatgtggtgggct
ttccttgcctcctccatggttacgttctttgggggtctcttcatcattctgctctggaga
tctctcaactacctgtggaccgtctgctgccactgtaataccaaaaaaaagaatgttcat
cgggtccatcaccctatctcccatggggatggcgtcaagcacaccaaggagacggtggct
gcactcagcgaggtgggctggatgacctccgtaaaagattgggccggggtcatgatatca
gcccagacactgacgggcagagtcctggtggtgcttgtctttgccctcagcatcggagcc
cttgtaatatacttcatcgattcctctgaccccatcgagtcctgtcagaacttctacaaa
gacttcacgctacagatcgacatggctttcaacgtcttcttcctcttgtactttggtcta
cggttcatagcggccaatgacaagctgtggttctggctggaggtgaactcggtggtggac
ttcttcactgttcccccggtgttcgtgtccgtctatctcaacaggagctggcttggctta
cggtttttaagggccttaagattgatacagttctcagaaatcttacagtttttgaatata
ttaaaaacaagcaattccataaaactggtgaacttgtgttcaatcttcataagcacatgg
ctaacagctgcaggcttcatacatttggtggaaaactcaggggatccttgggaaaacttc
caaaattcccagtcactttcctactgggaatgtgtctacttactgatggttaccatgtcc
actgtgggctatggagacgtgtatgccaaaactaccctgggacgacttttcatggtgttc
ttcatcctcggtggtttggccatgtttgcgagctacgtccctgaaatcatagagttaata
ggaaaccgcaagaaatatggtggttcctatagtgctgttaatgggagaaagcacatcgtg
gtctgtggtcatattacccttgaaagtgtgtccaacttccttaaagacttcctacacaag
gacagggatgatgtcaatgtagaaattgtttttctccataatatttcccctaatcttgag
ctggaagccttgttcaagcggcacttcacccaggtggagttctaccagggatctgttctc
aacccacacgacctggccagagtcaagatagagtcagcagatgcctgtttgatcctagct
aataaatactgtgcagaccctgatgctgaggatgcttccaacatcatgagggtgatatcc
atcaagaactaccacccgaagatcagaatcattacccagatgttgcagtaccacaacaag
gcccaccttttgaacattcccagttggaactggaaggagggtgacgatgccatttgcctt
gctgagctgaagcttggcttcatcgcacagagttgtctggctcagggcctctccaccatg
ctggccaacctcttctccatgaggtcctttatcaagattgaagaggacacgtggcagaag
tattatctggaaggagtagccaatgaaatgtatactgagtacctgtctagtgcctttgtg
ggcttatccttccccaccatttgtgaactctgctatgtgaagctaaagctgctactgatc
gctatcgagtacaagtctgatatacgggaaagcagcactctcatcaaccccgggaaccat
gtgaagatgcaggaaggtaccttggggttctttatcgccagcgatgccaaagaagttaag
agggcacttttctactgcaaagcttgccacgatgacatcacagatcctaaaaggataaag
aaatgtggatgcaaacgatcaaaaaataactataacggatatatcaaatcaatggaagaa
gagcagcagtcagctgtttcgcctaaaaagaaacaaggcaatggaaacacaaggaactca
cccaacggttcaccaaaaatgatgaggcatgaccctctcctcatgccggggaacgaacag
attgagaacatggatgtaaacgtgaagaagtacgactccacagggatgttccactggtgc
cagtccaaagacatcgagaaggtcatcttgacccggagcgaagctgccatgactgttcta
agcggccacgtggtcgtctgtatatttggagacgcaaagtcggctttggtgggccttagg
aaccttgtgatgcctctgagagctagcaacttccactaccacgagctgaaacccatcgtg
tttgtgggttctctggagtacctgaagagggaatgggagacccttcacaacttccccaaa
gtctccatcttacctggcacaccattgagccgggccgatctgagggccgtcaatatcaac
ctctgtgacatgtgtgtcatcctgtcggccaatcagagcaatatcgacgacgcttcactg
caggacaaggaatgtatcctggcgtcactcaacatcaagtctatgcagtttgacgacagc
atcggggtgttgcaggctacctcccaaggctttaccctgccaggcatggacaggtcttct
cctgaaaacagtccagttcacggggggttggtccgacaggcttccatcacaacaggagcc
aatgtccccatcatcactgaactagcaccgttagtaaaagcagcaggcaaagtcctacct
gtgatttcattcagtcaggatacaagcagtgggatcaacatacacataataacagaactg
gtgaatgactccaatgttcagttcctggaccaggatgacgacgacgaccctgacacagag
ttgtacctcactcagcccttcgcctgtgggacggctttcgcagtgagcgtgctggattcc
ctgatgagtgctacatacttcaatgataatatcctcaccctgatccggacgctggtaaca
gggggggccaccccggagctggagggtctgttggcggaggagaacgcattacgaggaggc
tacagcacgccgcagaccctcgctaaccgggacaggtgtcgtgttgcacagttagccttg
tacgacgggcctttcgctgacttgggggatggtggttgctacggtgacttgttttgtaaa
gcgttaaaaacatacaacatgctttgcttcggaatttaccgattgagggacgcccatcta
aacacacaaagtcatacaagtcaatgcactaaacgatatgtaataaccaacccaccgtat
ggttttgagctggtgccatcagacctgatcttctgcctgatgcagtttgaccacaacgcg
ggtcagtcccaggccagcctcacccatagctcccactcctcccattcctccagcaaaaag
agctcctccgtccattctatccccaccaccaaccgcaccaaccgcgccaagagcagggac
tcacgggataaacaaaagatgaatagaatgggccaagaaaagacatgctttatagatgag
cctgagaacgcagcctaccccaggaagtcacactctagtcacacagccaaccaccaggtc
aaccaccaggttaaccagaacccttacaaatccaccaacaacctcatcccgtccatcaga
gaggtggagggcgaatactga
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