Oncorhynchus tshawytscha (Chinook salmon): 112224778
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Entry
112224778 CDS
T05605
Name
(RefSeq) integrin beta-4-like isoform X1
KO
K06525
integrin beta 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04382
Cornified envelope formation
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112224778
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112224778
09142 Cell motility
04820 Cytoskeleton in muscle cells
112224778
04810 Regulation of actin cytoskeleton
112224778
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112224778
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112224778
04515 Cell adhesion molecules [BR:
otw04515
]
112224778
04090 CD molecules [BR:
otw04090
]
112224778
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
112224778
Exosomal proteins of bladder cancer cells
112224778
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin beta subunits
112224778
CD molecules [BR:
otw04090
]
Proteins
112224778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
fn3
Calx-beta
Integrin_B_tail
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
PSI_integrin
EGF_Teneurin
I-EGF_1
EGF_2
EGF_integrin
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
112224778
NCBI-ProteinID:
XP_042161987
LinkDB
All DBs
Position
LG25:complement(18312301..18347243)
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AA seq
2020 aa
AA seq
DB search
MREMGRWTLNLLVGVVLLAVLTASCYAEKVNHCLATRASTCSECIQSGKGCAYCPDEIFD
GPRCDLHDNIISRGCNSAVTAKSSMSMERNEQIDMLLKQSQVAPQEMSMTLLPGEEREIE
MEVFEPAKGPLDLYILMDFSNSMEDDLDNLKRMGAELAALVGKLSDDYTIGFGKFVDKVV
EPQTDMRPSKLAKPWPNSDPPFSFRHVITLTPDLRFFTEKLQKERISGNLDAPEGGFDAI
LQAAVCGEKIGWRSHATHLLVFSTESAFHYEADGANVLAGIMPRNDEQCHLDPEGKYTED
TRQDYPSVPTLVRLLGKHNIIPIFAITNHSFTYYQKLYEYFPIAELGLLQEDSANILNIL
EKAFENIRSKISIRAEDRPKAIEAQVLSYSGSVAQAGTFKVKPGQIGKFKVRVKASEMVG
EQHVCSLEQGDKKGKMRVKPTTFSTALNINAEVLCKTCDCEKTPTKNAVRCTGHGDLVCG
KCRCYGGWLGPFCNCSTSASPVAGSSCLGPDVGEPCSGRGDCLCGTCVCYNTDQYEGPLC
QFDKSQCQRYGGFLCNDRGRCFMGQCACAEGWEGPACECPMSNQTCLDTKGGVCNGRGVC
KCGRCECQDSGLAMTPTCEANFQAQLGMCEDKRSCVQCQAWKTGEKKDSDQCDQCQFKVV
MVDELKENKEVIEACSFRDEDDDCTYHYTVDYPEEQTDKELEVQVLKKKDCPPAGFLWLI
PLIMFLMLLLGLLLLCCWKYCACCKACLALLPCCGRGRMVGFKEDQYMLRQSLLTSDHLD
TPLVRTGPPKSTDVVRWKITDNVHRSPNHPLAQVQPNPKETIQFPLSLRLNRLFTESLSH
PDARDTEMLRREVDDNLNEVYKHVPGAQRVQNTKFRLQRNAGKRKDHTIVDTVVSAPRSS
YPDIVKLTEKNVQSGNFQDLKVVPGYYTVATDREAAGAVEFQEGVETVDVRVPLFIKEDD
DDKKQLQVEAVDVPLGIAEIGKRFVNITIIKEHAKSIMSFLQPSYTYSRQDRVANIPISR
EIIEDGHTQVTYRTRDLTAKDKKDYVTVDGELSYGPGETQQTVPVRLLELGEGDGLLKDT
QVKQFVMDLSNPRQGAKLGRYPRTTVTITDQPEPSVMMFMKSTQNFSTADPTYSIPVVRT
RNQEGPATVHWKTRNAKRFELSGPLKFSPGETEKNIVIDPRPHPGPVKPEIFQLELFDPS
TNAAVGERKTTMVTITDGALPEIAQKQQQGKDFINRTAMSPGGRLFSPTNVKANATGPRN
IRLNWDPLGSPLGYKVKYWIYGDPETDGQVIDVKTTHAELTNLYPFCDYEMKVCGYNALG
NGNYSDMVPCQTLEDVPSEPGRLAFNVISPTVTQVSWAEPAETNGVITNYEVLYTPINDN
TKPMGVAKKVKIDNPKKRMLLIENLQSAQTYCYKVRAKNSVGWGPFREATINLASQPVRP
MSIPIIPDIPIVDAEAGDEYDGYLMYSSEVLRSPTGSKRPSVSDEDQMNGRWEQNFLFPG
GNNSMSRSANMSSSSYSQLSPMSTLSSNHRGGAGGSMTTESSTTYLSGQGGNSLSRTQVI
GGGTRTENVVMRKRSENRGYYEYDDNIRDSIVIGDLSSGLSGYTDGKSTYGFSPTQTQYS
YSMSRVLRGRTQSEDVNDALLNLDRVLQDSRLASGVPDTPTRLVFSALGPTALKVSWQEP
HCDRDVLGYCVLYQLLNGGDMKRIDVSSPAENSVVVQDLLPNHSYLFKVKAQSLEGWGPE
REGVITIESAVNPNSPLSPMPGSPFTLSTPSAPGPLVFTALSPEALQLSWDKPRKPNGDI
LGYVVTCEQLHGGGDMRSFQVSGDSAETSLTVPDLSENMPYKFKVQARTTQGFGPEREGI
ITIESQDGGSTSQIGGIGGMSQLGGLGGMSQIQGLGGMSQLGGLGGMSQIEGLGGMSQLG
GLGGMSQIEGLGGMSQYSSQSLTKRDVFQLPTEVSTHSNVTHTMINDPYFSGDGMMMTSQ
HTETSGMVTRHVTKEVVQRSMQVAGSSSVTKKVERSFYEA
NT seq
6063 nt
NT seq
+upstream
nt +downstream
nt
atgagggagatggggagatggacattaaatctcttggtgggggttgtacttcttgctgtc
ctcacagccagttgctacgctgaaaaagtgaatcactgtctggctacgagggctagcacc
tgttcagaatgtattcagtcagggaagggctgtgcctactgtccagatgagatctttgat
ggtccccgctgcgaccttcatgacaacatcataagccgcggctgtaatagcgcggtgaca
gccaaaagcagcatgtcgatggaaagaaatgagcagatcgacatgctgttgaagcagtcc
caggtagctcctcaggagatgtctatgactctgctgccaggggaggagagggagatcgag
atggaggtgtttgaaccagctaaaggacctctggacctctacattcttatggacttctcc
aactccatggaggacgacctggacaacctcaagagaatgggtgctgagctggctgcgttg
gtagggaagctgtctgatgattacaccatcggtttcggcaagtttgtggacaaagtggtg
gagccccagacagatatgagaccatccaaacttgccaagccttggcccaacagtgaccct
cccttctcgttccgtcatgtgatcactctgacccctgacctgcggttcttcaccgagaag
ctgcagaaggagaggatctcagggaacctggacgctccagaggggggcttcgacgccata
ctgcaggctgcagtctgcggggaaaagatcggctggcgtagccatgccacccacctcctg
gtcttctccaccgagtcggccttccactacgaggcggatggtgccaacgtgctggcgggc
atcatgccacgcaacgacgagcagtgccacctggaccccgaggggaaatacacagaggac
accaggcaggactacccctctgtgcccaccctggtccgcctgctgggcaaacacaacatt
atccccatcttcgccatcacaaaccactcctttacctattatcagaagctttatgagtat
ttccccatcgctgagttgggtctgctacaggaagactctgctaacatcctcaatatcctg
gagaaagcctttgagaatatccgctctaagatcagcatccgtgctgaggacaggcctaaa
gctatagaagctcaggtcctatcgtacagtggcagtgttgcacaggctggaaccttcaaa
gtcaagcctggacaaatagggaagtttaaggtgcgtgtcaaggccagtgagatggttggg
gagcaacatgtgtgcagtctggagcagggtgacaaaaaggggaagatgagagtcaaaccg
acaaccttcagcacggctctaaacatcaacgccgaagtgctctgtaaaacctgcgactgt
gagaagacccccactaaaaatgcagtgcggtgtacaggccacggggacctggtctgtggg
aagtgccggtgctacggtggctggctgggtccgttctgtaactgctcaaccagtgcgtcg
ccggtcgcgggtagttcctgtctgggtcctgacgtgggggagccgtgttctggccgagga
gattgcctgtgtggaacgtgtgtgtgttacaacaccgaccagtacgagggacccctctgt
cagtttgacaagtcccagtgtcaacgatacggaggcttcctctgcaacgaccgtggtcgt
tgcttcatgggtcagtgtgcgtgtgcagagggctgggagggaccggcctgtgagtgtccc
atgagcaaccagacctgtctggacactaaagggggtgtctgtaacgggcgtggtgtgtgt
aagtgcggtcgctgtgagtgccaggactctggcctggccatgacccccacctgcgaggct
aacttccaggcccagctggggatgtgtgaggacaagaggagctgtgtccagtgtcaggcc
tggaagaccggagagaagaaggacagcgaccagtgtgaccagtgccagttcaaagtggtc
atggtggacgagctcaaggaaaataaagaggtgattgaggcgtgtagtttccgcgacgag
gatgacgactgtacgtaccactacaccgtggactaccctgaggagcagactgacaaggaa
ctggaagtccaggtgcttaaaaagaaagactgtccccctgctggcttcctgtggctgatc
cccctcatcatgttcctcatgctactgctgggtctactgctgctctgctgctggaagtac
tgcgcctgctgcaaggcatgtcttgctctgctgccatgctgtggaagaggccgtatggtt
ggctttaaggaggaccagtacatgctccgccaatccctgctcacctctgaccacctggac
acgcccctagtgaggaccggcccgcccaagagcaccgacgtggttcgctggaagatcacc
gacaatgtgcaccgatcacccaatcacccgctggcgcaggtccagcccaaccccaaagag
accatccagttccctctgtccctgcgtctgaacaggttgttcacagaaagtctgtctcac
cccgacgccagagacacggagatgctgcgcagggaggttgatgacaacctgaatgaagtg
tacaagcatgttcctggagcccagagggttcagaataccaaatttagattacagaggaat
gctggtaaaagaaaagaccacacaattgtagacacagtcgtgtccgctcctcgctccagc
taccccgacatcgtcaaattgactgagaaaaacgtccagtctggaaacttccaagatctc
aaagtggtgccgggctactacacagtggccacagacagagaggcggctggtgccgtggag
ttccaggagggggtggagacggtggatgtgcgcgtgccgctcttcatcaaggaagatgac
gatgataagaagcagctgcaggtggaggcggtggacgttcctctgggcatcgctgagata
gggaaacgcttcgtcaacatcaccatcatcaaagaacacgccaagagtattatgtcgttc
ctgcagccttcctacacctacagccgacaggacagagtggctaacatccccattagcaga
gagatcatagaggacggacacacacaggtcacctaccgcacccgagacctcaccgccaag
gacaagaaggactatgtgacagtggatggggaactgtcctacgggccaggggagacccag
cagactgtcccggtgcgtctattggagctgggagagggagacggtctgctgaaggacaca
caggtcaaacaatttgtcatggacctcagtaacccaagacagggagccaagctgggacgc
taccccagaaccaccgtcaccatcactgaccaaccagagcccagtgtgatgatgtttatg
aagagcacccagaacttctccacagctgacccaacctactccatccccgtggtccgcaca
cgcaaccaggaggggcccgccaccgtccactggaagacccgcaatgccaagcgcttcgaa
ctgtctggtcccctcaagttttctcccggggagactgagaagaacatcgtgatcgaccca
cgccctcaccctggaccggtcaaaccagaaatcttccagctggagttgtttgaccccagt
acgaacgccgcggtcggggagaggaagacgacaatggtcacgattactgatggagcatta
ccagagattgcccagaagcagcagcagggtaaggacttcatcaaccggacagccatgtcc
cctggtggtcgtctcttctctcccaccaacgtcaaggctaatgccactggcccacgaaac
atccgtctcaactgggaccccttaggaagccccctgggctacaaggtgaagtattggatc
tatggggaccctgagactgatggccaggtgatagatgtgaagaccacccacgctgagctg
accaacctgtaccccttctgtgactacgagatgaaggtgtgtggctacaacgccctggga
aacggaaactacagcgacatggtgccctgtcagaccctggaggacgtccccagtgagccc
ggtcgtcttgcgttcaacgtcatcagtccaaccgtcactcaggtcagctgggcggagcct
gccgagaccaacggtgtcatcaccaactacgaggtcctctacacacccatcaatgacaac
acaaagccgatgggtgtagctaagaaggttaagatagacaaccctaagaagaggatgttg
ctaattgagaacctgcagtcggcccagacctactgctataaggtccgggctaagaacagt
gttggctggggtccattcagagaggcaaccatcaacctggcctcacagcccgtcagaccc
atgtccatccctatcatcccagacatcccaatagtggacgcggaggcgggggatgagtac
gacggctacctgatgtacagcagcgaggtcttgaggtcgccaacaggctccaagagaccc
agcgtctcagacgaagaccaaatgaacggcaggtgggaacaaaacttcctgttccccggg
ggaaataattccatgtcgcgcagtgccaatatgtcgtcttccagctacagccagctgtct
cccatgtccaccctcagctccaaccacagaggaggggccggaggttccatgactacggag
tcctccacaacatacctctctggacaaggagggaactcgctctcccgcactcaggtgatc
gggggcgggacgcgcacagagaatgttgtcatgaggaagcggtcagagaaccgaggttac
tatgagtacgacgacaacatccgagattccatcgtcataggagacctgtccagtggattg
tcgggatacacagacggcaaaagtacttatggcttcagccccactcagacacagtacagc
tacagtatgtctcgggtcttgcggggcaggacccagtctgaggatgtcaacgatgcgcta
ctgaatctggacagggtgctccaggactctcgtttggcctctggggtccctgacaccccc
accaggttggtgttctctgccctgggccccacggccctgaaggtcagctggcaggagccc
cactgtgacagggatgtgctggggtactgtgttctctaccagctactcaatggaggtgat
atgaagcgtatagacgtgtccagcccagcagagaactctgtggtggtgcaggacctgctg
cctaaccactcctacctgttcaaggtgaaggctcagagtctggagggctggggaccagag
agagagggagtcatcaccatagagtcagccgtcaaccccaacagcccactcagtccaatg
ccaggttctcccttcactctcagcacccccagtgctccaggccccctggtattcacagct
ctgtcccccgaggcactgcagctgagctgggacaaaccccgcaaacccaacggagatatc
ctgggctacgtggtcacctgtgaacagctgcacggaggaggtgacatgcgttccttccag
gtgagcggtgacagcgctgagaccagtctgacggttccggacctgagtgagaacatgcca
tacaagttcaaagttcaggccaggacgacgcagggcttcgggcccgagagggagggtatc
atcaccatcgagtctcaggatgggggtagcacgtctcaaataggtggaataggtggtatg
tctcaactaggaggcctaggtggtatgtcccaaatacaaggcctaggaggtatgtctcaa
ctaggaggcctaggtggtatgtcccaaatagaaggcctaggaggtatgtctcaactagga
ggcctaggtggtatgtcccaaatagaaggcctaggaggtatgtctcagtacagcagtcag
tccttgaccaagagagatgtgttccaactgccgacagaggtcagcacccacagcaacgtc
acacacaccatgatcaacgacccctacttctcaggggacggtatgatgatgacttcccag
cacacagagaccagcggcatggtaacccgtcatgtgactaaggaggtggtccagaggagc
atgcaggtggccggctccagcagcgtcaccaagaaggttgagaggtcgttctatgaggct
tga
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