Oncorhynchus tshawytscha (Chinook salmon): 112224783
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Entry
112224783 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3 isoform X1
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112224783
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112224783
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112224783
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-C3HC4
zf-RING_UBOX
WDR55
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_EML_2
zf-RING_5
zf-rbx1
zf-C3HC4_3
zf-C3HC4_2
zf-C3HC4_4
zf-RING_11
EIF3I
zf-RING_Vps41
CFAP43_N
Beta-prop_WDR3_1st
zf-ANAPC11
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Rtf2
WD40_2
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_RIG_2nd
Zn_ribbon_TiaS
WD40_Prp19
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_2nd
zf-UDP
DUF6779
Motif
Other DBs
NCBI-GeneID:
112224783
NCBI-ProteinID:
XP_024244239
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All DBs
Position
LG01:complement(14886515..14916036)
Genome browser
AA seq
715 aa
AA seq
DB search
MEAMEVDLQLGVPRREPEPDAMAGNVEPPIIIPDSGSETEVEDEADAAPLDPPRLPTTWA
FSQNRIRVEGQVGPRIRMEGHIGHRVTTAAVLRQRRARPGVRVLYPTQTSPSASRFLDFL
LRVPAANPDSGNTTESSESEDEADPTGPVDPHNPDEPAVPSSPGMNPPVAATPLQGPNPS
DSNATTEAVRTETGNQVNPESVTAPVATSGAALRSSQGDEGEGETCSICFEPWTTSGEHR
LATLRCGHLFGYTCISRWVKGQGQGAKCPQCNKKAKRSDIVLLYARKLRALDNTEQENMK
RSLEQEQSMRRNAELESAQCRLQLQVMTDECGKLRKQIQELKTLMAQPGCRPSKNSGASL
SGLSQRQDSTQGGHYVFSKAVLVSQAGGCRVLSYCEPLSCLLASHPSPHTTLVPGYGVKK
VSTVNLKACQYVPIHVKQIRGLAFNRQADSLLLSAALDNTIKLTSLMTNTVVQMYNTGKP
VWSCCWCLDNNNYVYAGLSNGSVLVYDTRDTSTHVQELQPLRSRCPVASLSYVPRASSSS
FPCGGLIAGSLEGGCFWEQVDGTTYRPHILPLETGGCTDIQVEPESRHCLVTYRPGRSNP
SLRCVLMELNRTLQQDAAQEPLCSCYPVQTFSAGSSCKVLTKNAVFRSPAGEGSTLVCAG
DESTNSTMVWDAGSGSLIQKLPADLPVLDICPFEVNQGSYLASLTEKMLKIYKWE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgatggaggtggacttgcagctgggggtccccaggagggaaccagaaccagat
gctatggcaggcaatgtagagccccctatcatcatccctgactctggcagcgaaactgag
gttgaggacgaggcagacgcggctcccctagacccaccacggctcccgaccacctgggcg
ttcagtcagaacagaatcagagtggagggtcaagttgggcccaggatcagaatggagggt
catattgggcacagggtcactacagcagcagtcctgaggcagcggagagccaggccaggc
gtcagggtgctctaccccacccagacctctccctctgctagccgcttcctagatttcctg
ctgcgagtccctgcagccaaccctgactctggcaataccacagagtcgagcgagtcggag
gatgaggcagaccccacagggccagtagaccctcacaaccctgacgaacctgctgttccc
tccagccctggaatgaaccctcctgtggcagccacgccactgcaaggcccaaatccttca
gattctaatgcaaccacagaggctgtgaggacagagactggaaatcaagtgaatcctgag
agtgtaacagccccagtggccaccagtggtgcggctcttcggtcgtcccaaggggatgag
ggggagggggagacctgctctatctgctttgagccctggaccacgtcaggggagcaccga
ctggccaccctgcgctgcggacatctcttcggctacacctgcattagccgctgggtgaag
ggccagggccagggagccaagtgtccccagtgcaacaagaaggccaagcgctctgatatc
gtcctcctgtatgcacgcaagctgagggctttggacaacacagagcaggagaatatgaag
aggtcattggagcaggagcagtcaatgcgtaggaatgctgaactagagtcagcccagtgc
cggctacaactgcaggtgatgacagacgaatgtgggaaactacgcaagcagatacaggag
ttgaagacgctgatggctcagcctggctgtaggccttctaagaactcaggggcctctctc
tctgggctctcacagagacaggacagcacccaggggggccactacgtcttctccaaggcc
gtgctagtgtcccaggcggggggatgcagggtgctgtcctactgtgaacccctcagctgc
ctgctggcctcccatccctccccacacaccacactggtgcccggctatggtgtgaagaag
gtgagtacggtgaatctgaaggcatgccagtatgttcccatccatgttaaacagatcaga
ggcctggcattcaacagacaagctgacagcctcctgctctctgctgccctggacaacacc
atcaaactcaccagtctaatgaccaacacagtggtgcagatgtacaacacgggtaagcca
gtgtggagctgttgctggtgcctggacaacaacaactacgtgtacgctggtctcagtaac
ggctctgtgctggtgtatgataccagagacaccagcacacatgtccaggagctgcagcca
ctacgctctaggtgtcccgtggcctcactgtcctacgtgcctcgcgcctcctccagctcg
ttcccatgcggcggcctcatcgcaggttctctggaggggggctgcttctgggagcaggtg
gacggcaccacttacagaccccacattttgcccctggagacaggaggctgcacagacatc
caggtggagccagagagcagacactgtctggtcacctacagaccagggcgctccaacccg
tctctgcgttgtgttctgatggagctgaacaggactctacagcaggatgcggcccaggag
ccattgtgttcctgctaccctgtccagaccttcagcgccggctcctcatgcaaagtgctc
accaagaacgctgtgttcagaagcccagccggggagggctccactttagtctgtgccggg
gacgagtccactaactccaccatggtgtgggatgcagggagtggatccctgattcagaag
ttgcctgctgacctcccagtgttggacatctgcccgtttgaggtgaatcagggcagttac
ctggcctcgctcactgagaagatgctcaaaatctacaagtgggaataa
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