Oncorhynchus tshawytscha (Chinook salmon): 112224858
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Entry
112224858 CDS
T05605
Name
(RefSeq) CLIP-associating protein 1-like isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112224858
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112224858
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
112224858
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
112224858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
XMAP215_CLASP_TOG
HEAT
HEAT_EZ
Sec7-like_HUS
Cnd1
HEAT_2
RTP1_C1
ParcG
MMS19_C
TAN
Motif
Other DBs
NCBI-GeneID:
112224858
NCBI-ProteinID:
XP_042162484
LinkDB
All DBs
Position
LG26:complement(37144532..37271028)
Genome browser
AA seq
1644 aa
AA seq
DB search
MEVNMEYCLAQVVQKDLGRKVQVGQELIDYILDKDRSQDLEQDQTGLDRMVDSIATTWVN
CSNFKVALLGIDLLSVLVTRLQDRFRNHVGTVLPSLIDRLGDSKDQVRDQDQILLLKIME
QAATPQYVWDRMLGGFKHKNNRTREGVCLCLISTLNTYGAQGLTLSKIVPHICNLLGDPT
SQVRDGAMGCLVEIYRHVGERVRMDLSKKGLPQSRLNVIFSRFDEVQRSGNMIPSSGSDK
NFDDEDSVDGGRSCSSASSSKAPPSGRRTVAAASVRRPSSATGPGKISAKDAAAGAVDEE
DFIKAFEEVPTIQIHSNREMEDNLSKVREVLSDDKNDWEHRVIALKKVRSLLLAGALEYD
SFPQQLRLLEAPLKLSAKDLRSQVVREACITLGYLSTLMGNKFDHCAETLMPTLLNLVPN
SAKVMATSGMAAIRLILRHTHYSRLIPIITSNCTSKSVPVRRRSYEFLELLLLEWQTHTL
ERHVAILTETIKKGIHDADSEARSVARKCYWGFHGHYSREAEHLFQALESTYQKALQSHL
KSSDSVVSLPQSDRSSSSSQESLNRALSVKSVIGGGMTRGKMVSSRVNSNPGGSLQRSRS
DIDVNAAASAKSCLVTVPSASPFSSAATLPPGSYASLDGTPGKINTGRVRTRRTSAGSAV
GASATVTDSRGRSRAKMVSQSQRSRSANPTGGGKARTSSNQTGSRSSSPGKLLGHSSGYG
RISRPPSASSTPADKRSKVPRSQGCSRDSSPSRLGLARSRIPRPSMSQGCSRETSRESSR
DTSPARGFKPLASRRTSRSTSALSTADPHGQSDRFGLIHQDRISASVNAMRVLNTGTEVE
AAVADALLLGDSRNNKRKPMRRRYESPGIYSDDDANSDASSACSERSYGSRNGGIPHYLR
QTEDVAEVLNHCASSNWSERKEGLLGLQNLLKNQRILSRVELKRLCEIFSRMFADPHSKR
VFSMFLETLLDFILVHREDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDITRESFPF
DHQFNILMRFIVDQTQTPNLKVKVAILKYIESLARQMDPTDFVNSSETRLAVSRIITWTT
EPKSSDVRKTLHNWVVEELSGRSSTAALLSQQAGEGQLEERCKQAAQVVLISLFELNTPE
FTMLLGALPKTFQDGATKLLQNHLKNSSNTSSVSSPSNTIGRTPSRHPPSRTSPLTSPTN
CSHGGLSPSRLWGGCWSGDGLPKHPPPPHPPPPHSTPAGPALRVLRRAYSPSMLEYDTEN
MNSDEIYSSLRGVTEAIQSFSYRSQEDLNELRGKRDDAAGREGVAPSPGSDARLGLDVVE
GGRTALDNKTSLLNTPSPRSFSGPRTREFAPYGYGDTITSSYDKSALKEAVFDDDVEQFR
DCRRQDSSGENKMVISKGFAPGSQDHSDLVADLLKELSNHNERVEERKGALVELLKITRE
DSLAVWDEHFKTILLLLLETLGDKDYTIRAMALRVLKEILRNQPARFKNYAELTIMKTLE
AHKDSHKEVVRAAEESASTLASSIHPEQCIKVLCPIVQTADYPINLAAIKMQTKVIERIT
KESLHQLLPDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEELKPHLQLLTGSKMKLL
NLYIKRAQTTNSNSSSSSDVSSHS
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaatatggagtactgtctggcccaggtggtgcagaaagacctggggaggaag
gtgcaggtgggacaggagctcatagattacatcctggataaggataggtcccaggatctg
gagcaagaccagacaggtctggacaggatggtggacagcatcgctaccacctgggtcaac
tgttccaacttcaaggtggctttgcttggaatagaccttttatctgtcctagtgacaagg
ttacaggaccgatttaggaaccatgtgggaacagtactgcccagtctgatagatcgtctg
ggggattccaaagaccaagtcagagaccaagatcaaatcctgctgctgaagatcatggag
caggctgccaccccacagtatgtgtgggacagaatgctgggaggcttcaaacacaagaac
aacaggaccagagagggagtgtgcctttgtctcatctcaacgctcaacacgtacggagcc
caaggcttaaccctcagtaaaatagtccctcacatatgcaatctactaggagatcccacc
agtcaggtgagagacggagctatgggctgcctggtggagatctacagacatgtgggggag
agggtgaggatggacctcagcaagaagggcctaccacagtcacggttgaatgtaatcttc
agtagatttgatgaagtccaaagatctgggaacatgatcccatcctcgggttcagataag
aactttgatgatgaggactctgtggacgggggcaggtcctgctcctccgcatcgtcctcc
aaggcgccccccagcgggaggaggactgtagctgcagcttctgtccgcaggcccagctct
gccaccggacccggcaagatctctgctaaagatgctgctgcaggagcagtagatgaggag
gacttcatcaaggcttttgaagaggttcctactatccagatccactccaacagagagatg
gaggacaacctctccaaggtccgggaggttctgtctgacgacaaaaacgactgggagcac
cgagtcatcgctctgaagaaggtgcgttctctgctcctggctggagcgctggagtatgat
agtttccctcagcagctccgtctgctggaggcccctctgaagctgtctgctaaagacctg
aggtcccaggtggtacgagaggcctgcatcacactgggatacttgtccacgctaatggga
aacaagtttgaccactgtgcagagaccctgatgcccacactgctcaacctggtgcccaac
agtgccaaggtgatggccacgtctggcatggcagccatacgtctcatcctcaggcataca
cactactcacgtctcatcccaatcatcactagtaactgcacgtccaaatcagtgccagtc
agacgacgcagttatgagttcctagagctgttattactggagtggcagacacacacactg
gagaggcacgtggctattctgacggagaccatcaagaaagggatccatgatgccgactca
gaggccaggtccgtggccagaaagtgttattggggtttccatggccactacagcagggaa
gcggagcatcttttccaggccctggagtcgacctatcagaaggctctccagtctcacctg
aaaagttctgacagcgttgtgtccctcccccaatcagaccgctcatcctcctcctctcag
gagagcctcaaccgggccctgtctgtcaagagtgtcataggaggcggcatgacaaggggg
aagatggtgagttccagggtgaactctaaccccggcggttctcttcagcgttcccgtagt
gacatcgacgtgaacgctgcggccagcgccaaatcctgtctggtcaccgtgccctccgct
tctcccttcagctcagccgctactctgcccccaggctcctacgcctctctagatggcaca
cctggtaaaattaatacgggtcgtgtgcgtacgaggaggacaagcgctggcagtgccgtc
ggagccagcgctactgtgactgacagcagggggcgcagccgagccaaaatggtatcccag
tcccagcgatccagatctgctaaccccactggcggtggtaaggcccggacttcatccaat
cagactggcagtcgctccagttcccctggcaagctgctgggccactcgtctgggtacggg
aggatcagcaggcccccctctgcctccagcacccctgcagacaagaggagcaaggtcccc
cgcagccagggctgcagtagagattcctctcccagccgactgggactagcgaggagccgt
atcccccggcccagcatgagtcagggctgcagcagggaaacctctagggaaagcagcaga
gacaccagccctgctcggggtttcaagcctcttgcctcccgacgtacttcccgctctacc
agtgccctatccacggctgacccccacggccagtcagatcggtttggtttgattcaccag
gaccgtatctctgcctcagtaaatgccatgagagtcctcaacactggcactgaggtggag
gctgctgtggctgatgcactgctgttaggagactccagaaataataagaggaagcctatg
aggcggcggtatgagtctccgggtatctattctgacgacgatgctaacagcgacgcatcc
agtgcatgctcagagcgctcatacgggtccaggaacggaggtatccctcactacctgcgt
caaacggaggatgtggcggaggtgctaaaccactgtgccagctccaactggtcagagagg
aaggaggggctgctgggtctgcagaacctactcaagaaccaaagaatactcagccgggtg
gagctgaagagactatgtgagatcttcagcaggatgtttgcagatccacacagcaagaga
gtgtttagtatgtttctggagactctgttggactttatcttggtgcatagagaagacctg
caggactggctgtttgtcctgctcacccagctactgaagaagatgggagctgacctgctg
gggtctgtccaggccaaggtccagaaggctctggacatcaccagggagtcttttccgttt
gatcaccagttcaacatcctgatgaggttcattgttgaccagacacagacacccaacctc
aaggtgaaggtggccattctgaagtacatagaatcactggcaagacagatggatccgaca
gactttgtcaactccagtgaaacccgactggctgtatctcgcatcattacgtggaccaca
gagcccaagagctccgacgtcaggaagacccttcataactgggtggtggaggagctatca
ggcaggtccagtactgcagccttactgtcccagcaggccggggaggggcaactggaagag
aggtgtaagcaggcagcccaggttgtgctgatctctctgtttgagctgaacactccagag
ttcaccatgctgctgggagcattgcccaagaccttccaggacggggccaccaagctgctt
cagaaccacctgaagaactccagcaacaccagcagcgtgagttctcccagcaacactatt
gggcggaccccaagccggcaccccccaagccggaccagccctctcacttccccaaccaac
tgctcccatggggggctatctcccagtcggttgtggggtgggtgttggagtggcgatggg
ctacctaagcacccccctccccctcatcctcctccacctcactccacccccgccggcccc
gccctcagggtcctccgcagagcgtactctcccagtatgttggagtatgacacagagaac
atgaactctgatgagatctacagctccctgcgaggggtcacagaggccatccagagcttc
agctaccgcagccaggaggacctcaacgagttgagagggaagagggacgatgctgcggga
cgggaaggtgtggcgccctctccaggctctgatgcccgtctggggctggatgtggtggag
ggtgggcgtacggccctggataacaagacctcccttctcaacaccccgtccccccgctcc
ttctctgggccgcgaaccagggagttcgccccctacggatacggagacaccatcacctca
tcctacgacaagagcgccctgaaggaggccgtgtttgatgacgacgtggagcagtttaga
gactgccgtcggcaggacagcagtggtgaaaacaagatggtgatctctaagggctttgct
ccaggttcccaggaccactcggacctggttgcagacctgctgaaggaactgtcaaatcac
aatgaacgcgtggaggagcgtaaaggggcgttggtggagctcctgaagatcacccgggag
gacagcctggccgtgtgggacgaacacttcaagaccatcctcctactgctcctggagaca
ctgggggataaagactacactatccgggctatggcactgagggtactgaaggagatactg
cggaaccagccggcccgcttcaagaactacgctgaactcaccatcatgaagaccctggag
gcacacaaagactcccacaaggaggtggtaagagcagcggaggagtctgcctccacccta
gccagctccatccacccagagcagtgtatcaaggtgctgtgtcccatcgttcagacggct
gactaccccatcaacctggctgccatcaagatgcagaccaaggtgatcgaacgcatcacc
aaggagtccctgcaccagctgctgcctgacatcataccaggactactgcagggctatgac
aacacagagagtagtgttcgcaaggccagcgtgttctgtctggtggccatctactccgtg
attggagaagagctcaaaccacacctgcagctactcacgggcagcaagatgaagctgctg
aacttgtacatcaagagggctcagacaaccaacagcaacagcagcagttcctcggatgtc
tcttcacacagctag
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integrated database retrieval system
