KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112224865
Entry
112224865         CDS       T05605                                 
Name
(RefSeq) LOW QUALITY PROTEIN: telomere-associated protein RIF1
  KO
K11138  telomere-associated protein RIF1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:otw03032]
    112224865
DNA replication proteins [BR:otw03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    112224865
SSDB
Motif
Pfam: Rif1_N HEAT_ULK4
Other DBs
NCBI-GeneID: 112224865
NCBI-ProteinID: XP_042162523
LinkDB
Position
LG26:complement(38446821..38478439)
AA seq 2765 aa
MATVPLTSSSLLPLLESLEDITAGQPEQTDAYLTIVNRLSGDDGTQFLPAVVKNFSRLGR
TFQTHIASQNAELSQAALQALGFCVFHANVVSAIPANFAEELLSALSSLVVKSTDKNTCT
RALWVISKQNFPPEVVAKMVPDILRTLECVRTREDIQSVVIEHESLNVIIRLLDQTPAQM
GECAVQWAKLVIPLVVHSASKVRLRAAAALEMGLPLLMEKQKEVAAIIEPIMSSKLIPEL
QKLFSTKNETNVLKLWPLFVRLLGKLLHRGGPFINSLLGLEELGFRSSSPNIKKIAFIAW
KSLIDNFSLNPEILCSAKRLKLLLQPLRSIQVRTEALLLTKLEVWWYLVVKLGPNLPAHF
EQVGVPLLQCTLGTDSAFPTTPARSSIQNSAVGTSTHKTGAPAFSSPTVMPRLSLNCSVV
AGQAYPSIQLLGLEMLLHYFMGSEVTAAAAKNQLTLSLEPLVHPFLSSPPSFTKHGSLLI
SAVRDSFICIGKDAPDALLALIWRNLVSFVITTIDAAGHKKERQGSELLPLLLQALQSII
SSEALPAHRALSLLEMTVKGIPQRILGSASYQVGKMDLLNGTPALFLILLFYNSSLVGGF
VEDERFFLCLETLVSCGLSGLTSPLAFGEAVLGAVGRSAGTLGNKEQLWRMWSVVVNPLT
VTITQTNEVNQGDALEHNFSAVHTALMFPITHLLPGNALPHVTQKSMLGTWSRLYKVFAC
CSALVATAEENVCCEELCGKMAALLDRKALRVPSTLDAVANILLVIVESSDFSPYTSQFQ
QKMKSPHTPLAWVRKKSKALGNLSTFQTLLVQALEAFNAVESPETVPEGTGLALVSILST
LFSNLALATAIQEALASLTLPLTALYEQPGRTPNEQPKSTSSLGAKLEKLLVDVLGCLQT
CSALAYDDELLSLLSPLLCVLFLHRRKHIRSLVTQFWNATFANALVLVYPEELKPVLSQV
KQNTPILLPGFQSVEVPDELSGQYSSESSQLETKVSGVQVTPGVKRDSLLVRVGEMDRSS
KTCKPVSMKLDFGSPKPPRREELEEQASIDFVFIPPETKERVLTEHQKEVKRTKRVDIPA
MYNNLDASLDTTAFTQYTQSQEESLDKFPAVEQAEDAEKDEVKAEVPEENMEMGEDVADD
TQEYISPTNETTESAKGEDKPADELLPESADISMEEDVNEDVLLKEDSAVETREDTSPDV
SGGSDMVSGTPQKTNSRRQSFITLEKYAEGKPASPASVVMFTGPLTRTANSQAQAASSPE
PPARAGQAQAASSPEPPAGAGQAQAASSPEPPAGAGQAQAASSPGTTGRGRPGAGGFLSG
TTGRGRPGAGGFLSGTTGRGRPGAGGFLSGTTGRGRPGAGGFLSGTTGRGRPGAGGFLSG
TTGRGRPGAGGFLSGTTGRGRPGAGGFLSGTTGRGRPGAGGFLSGTTGRGRPGAGGFLSG
TTGRGRPGAGGFLSGTTGRDXTDSQETEQARCRSFKNQSSKNEGEKPEPSEDKKQSEVEK
PAEKRTSETDEDDVIPDTQTPVEILTEVLVPAFEEVVMENNSQKEESQGLLEGPPSSQAD
LSQGEPRRSGRRRSRPLRPGEDAEEWEEKDKRRKSQPKEAECQMDSPKTVPSPVSQADGQ
SQGRASRRSKLAVDVEDCGKDKLRKISHKEESELSRSNSQVATPSPAADINSQSQSSTVS
SRRSSKSEDLVKDQQKRGVAEEELSQSDSQTDTPSASNDSQSQSRCSKRSKLAVEVEDDC
RQKLRSIRAQKVEEKTSQIDSHVAKPSQQESQSQGSASWKSKPLSDLEEVDFVDEVDKQD
PTEHESDSQIATPSPADQTGDGQSQGRSSRRSKLVTESEEQGKGKPKRRGGTELLSQIDS
QTTPSTTPSATPTDSQSQGRASRRSKVPIEVAESEVKRSLHLATDSAATPEKSQTHYQVA
PSATSPTDRQLRPRGRTSKRNKMLKEQVKANNSPNPTPNMETENSQVADTESSQGSGRTK
RHNASQALLVSNVENSESDASEPREDVQKGRKPTSAGAVPSPLATVGSAERGADQEIPMD
SSETSLKSDSQNPSSDALEVVKIPQDVEEALKMVNSLKPEVLVPSLPVMTKKDLGQRETD
MGGMVKAVDPFVPEKAESENAKLSSQQTDSSVEPDLEHMKSQDVCMSRRKKERGHKWSKS
KANFNTVSSQESDHDDLECDRPTQIQRMLLNYSEQANSLTPSTEGNAISEDGLNKLCTPP
IANGLPTDTSPTEATEEKLSLKVSESSEKVLDGLKPVAVSSEEVTEEQMGEHEENRHPES
ATNVLEEDQREDVGRSIGQAQSGCSKALDEEQREEQYTSIKEGQPEADGTSTGTRETHTE
PQADNIQDITPLQERAKTDNVSGLECEEEGEETQMANNDLDLSPLNSFTLVPSDLHEAPV
PLHHPSTSKDMLCQDSPPKQKDTVMGLEVGHSPSSGRTRGLWSPLASPSTSILKKGQKRP
IEEESPSPFTKSRRVSFADPIQHQELADDIDRRSPVIRSSSPRNKTTSSSIPQAKYITTP
TKGLLILSPRNLRSPGYKSSKKCLISELGQEPRPIPKDCVYPALVRCSTPVEAVLPQITS
NMWPRGFGQLVRARNIKTVGDLSALTPSEIKNLPIRSPKISNVKKALKIYHEQQQKGRSD
ELKSFEEMEKLTSELEEPTVPQNQGEDKTPGDALVTELLDEPVSKEHKEHPEERPDQSRP
DHQKTAEGGLLLEVESLAAHLTGEGLSHCSSDQLVLIHDQLGGMMRTVVLQLQSRLLAQN
KDSGP
NT seq 8298 nt   +upstreamnt  +downstreamnt
atggcgacagtgcccctgaccagctccagtctcctccctctgctggaatctctggaggat
atcacagccggacagccggagcagacagacgcctacctcaccattgtcaatcgtctcagt
ggggatgatggaacacagtttctccctgctgttgtaaagaacttttcacgtttgggtaga
actttccagacccatatcgccagtcagaatgcagagctgagccaggctgcactacaggcc
ctggggttctgtgtgttccatgccaatgtcgtctcagctatcccagctaattttgcagag
gagctactgtcagctctttcctctctggtggtgaagtctacagacaagaacacatgcacc
agagcgttatgggtcatctccaaacagaacttccctccagaggtggtggccaagatggtg
ccagatattctgagaaccctggagtgtgtacggactagagaagacatccagtctgttgtc
atagagcatgagtcgttgaatgttatcataaggctgctggaccagaccccagcccagatg
ggtgagtgtgcagtgcagtgggccaagctggtcatccctctggtggtccactcagcctct
aaagtgcgcctgcgggcggcagcagccctggaaatgggtctgcctctactaatggagaaa
cagaaagaggtggcagccatcatagaacccatcatgtcctctaaactcatcccagagctc
cagaaactgttctctacgaagaacgagaccaatgttctgaaactctggccgttgtttgtc
aggctcctagggaagctgctccatagaggtggtcccttcatcaactccctgcttggcctg
gaggaactgggcttccgtagctcctcccccaacatcaagaagatcgccttcatcgcctgg
aagagcctcatagacaacttctccctcaatccagagatcctgtgcagtgccaagcggctg
aagttactgctgcagcccctccgctccatccaggtgaggactgaggccctgctgctcacc
aagctggaggtctggtggtacctggtggtcaaactgggacccaacctgcctgcacacttt
gaacaggttggtgttcctctcctccagtgcaccctgggcactgactctgccttcccaact
actccagcccggagctccattcagaacagtgctgtggggaccagtacacacaaaactggt
gccccagccttctccagccctacggtgatgccccgtctgagcctgaactgcagtgtggtg
gcgggccaggcctacccctctatacagctgctgggattagagatgctgctgcactacttt
atggggtcagaggtcaccgccgccgctgccaagaaccaactgacgctcagcctggaacct
ctggttcaccccttcctgtccagccccccctccttcaccaagcacggctctttgcttatc
tccgcagtccgcgacagcttcatctgcatcggcaaagacgccccagatgccttgcttgcc
cttatatggaggaaccttgtcagtttcgtaatcacaacgattgatgctgctggccataag
aaagagcgccagggctctgagctcctccccctgttgctacaggctctacagagcatcatc
tcctcagaggccctccctgcacacagggctctgagtctgctggaaatgacagtgaagggt
atccctcaaaggatactgggatctgcctcttaccaagtgggcaaaatggatcttttgaac
ggaactccggctctgttcctgattctcctgttctacaacagcagtctggtgggagggttc
gtagaagatgagaggtttttcctgtgtttagagaccctagtgagctgtggtctctccggc
ctcacgtcccctctggcatttggggaggcggtcctgggggcggtggggcgcagcgccggg
actctggggaataaggaacagctgtggaggatgtggagtgtggtggtcaacccactgact
gttaccatcacacagaccaatgaggtgaaccaaggggatgctctggagcacaacttcagt
gctgttcacactgccctgatgttccccatcacacacctgctacctggcaacgccctgcca
catgtgacccagaagtccatgctgggtacgtggtccaggctgtataaggtgtttgcctgc
tgctctgccctggtggccacggccgaggagaatgtctgctgtgaggagctgtgtggcaaa
atggctgccctattggacaggaaggccctgagggttccgtcaacgttggatgcggttgct
aacatcctcctggtcatcgttgagagttctgacttctctccctacacttcacagtttcaa
cagaagatgaaatctccccatacccctctggcctgggtgcgtaagaaaagcaaagccctt
gggaacctgtctaccttccagaccctgctggtccaggccctggaggcctttaatgctgtt
gagtctcctgagactgtccctgagggtacaggcctggccctggtctccatcctctctacc
ctgttctctaatctggccctggctacagccatccaggaggccctggcctctctcacactg
cccctcacagccctctatgaacagcccgggaggactccaaatgagcagccgaaatccacc
tcaagtcttggagcaaagctggagaagctcctggttgatgtgttgggctgcctgcagaca
tgttccgccctggcctatgatgatgagctgctgtccctgctgtcccccctgctctgtgtc
ctgttcctccaccggcgaaagcacatccgctccctcgtcacacagttctggaacgcaacc
ttcgctaacgctttggtcctcgtctacccagaagaactcaagccagtgttgagccaggtg
aagcagaacactcctatcctcctacctggctttcagtctgttgaagttccagatgaactc
agtggacagtactcaagtgagagctctcagctggagaccaaggtgagtggagtgcaggtg
actcctggggtgaagagagactctctactggtgagggttggagagatggacaggagctcc
aagacatgcaagcctgtctcgatgaagctcgactttggctctcccaagccgcctcgtaga
gaggaactggaggagcaggcctctatagactttgtgttcatcccccccgagaccaaggag
agagtcctcaccgagcaccagaaagaggtcaagagaaccaaaagggttgacattcctgcc
atgtacaacaacctggatgcttcccttgataccacggccttcacccagtacacacagagt
caggaggaatcactggacaaatttccagcagttgaacaagccgaagatgctgaaaaggat
gaggttaaagcagaggttccagaagaaaacatggaaatgggggaggacgttgctgacgat
acccaggaatatatcagtccaaccaatgagacaacagaatctgcaaagggagaggataag
cctgctgatgagttacttcccgagtctgcagacatttccatggaggaggatgtcaatgag
gatgttttattgaaggaagactctgctgtggagaccagagaggacaccagccctgacgtc
tctggcggctctgacatggtctcagggacgcctcagaaaaccaacagtcgtcgccagtct
ttcatcactctggagaagtatgctgaggggaagcctgctagtcctgccagcgtggtgatg
tttacaggccccctcaccaggactgctaacagccaggcgcaggcggcttcctctccggaa
ccaccggcaagggccggccaggcgcaggcggcttcctctccggaaccaccggcaggggcc
ggccaggcgcaggcggcttcctctccggaaccaccggcaggggccggccaggcgcaggcg
gcttcctctccgggaaccaccggcaggggccggccaggcgcaggcggcttcctctccgga
accaccggcaggggccggccaggcgcaggcggcttcctctccggaaccaccggcaggggc
cggccaggcgcaggcggcttcctctccggaaccaccggcaggggccggccaggcgcaggc
ggcttcctctccggaaccaccggcaggggccggccaggcgcaggcggcttcctctccgga
accaccggcaggggccggccaggcgcaggcggcttcctctccggaaccaccggcaggggc
cggccaggcgcaggcggcttcctctccggaaccaccggcaggggccggccaggcgcaggc
ggcttcctctccggaaccaccggcaggggccggccaggcgcaggcggcttcctctccgga
accaccggcaggggccggccaggcgcaggcggcttcctctccggaaccaccggcagggac
tgaacggactcgcaggagactgaacaagcaagatgtagaagcttcaagaatcagtcttcc
aaaaatgagggagagaaacctgaaccttcagaagacaaaaagcaatctgaggttgagaaa
ccagctgagaaaagaacaagtgaaactgacgaggacgacgtcatcccagacacccagact
ccggtggaaatactgacggaagttctagttcctgcatttgaagaagtagtaatggaaaac
aacagtcagaaagaggaatctcaaggtcttctggaaggtcctcccagttcccaggccgat
ctgagccaaggtgaaccaaggcggtccggaaggcggaggagcaggccactgagaccagga
gaagatgcagaggaatgggaagagaaagacaaacggaggaagtctcaacccaaagaggca
gagtgtcaaatggattcaccaaagactgtgccctctcctgtcagtcaagcagacggtcag
tcacagggtagagccagtaggagaagtaagctggctgttgacgtggaggactgtggaaaa
gacaagctgagaaaaataagtcacaaggaggagagcgagttgagccgatcaaattcacag
gtggccacgccttcacctgctgctgatatcaacagccaatcacagagtagcacggtatca
agtagaaggagcagcaaatcagaggatttggtcaaagaccaacaaaagagaggtgttgca
gaggaggagctcagtcaaagtgactctcaaacggacaccccctctgcctctaatgatagc
caatcacagagtagatgtagtaagaggagtaagttggctgtggaagtggaggatgattgc
aggcagaaactaaggagtattagggctcagaaggtggaggaaaagacgagccaaattgat
tcacatgtagccaaaccatctcaacaagagagccagtcacagggtagtgcaagctggaag
agcaaaccactcagtgatttggaggaggttgactttgtcgatgaggttgacaagcaggat
cctactgagcacgaaagtgattctcagattgccacaccctctcctgctgatcaaacagga
gatggccaatcgcagggtagatctagcaggaggagtaaattggtcaccgagtcagaagaa
cagggtaaaggcaagccgaagaggagaggtggtacagagctactcagccaaattgactca
cagactacaccttcaaccacaccttcagccactccaacagacagccagtcgcagggtaga
gcaagcaggagaagcaaggttcccattgaagtggctgagtctgaggtcaaaagaagcctg
catttggccactgattcagcagcaacaccagagaagagccagactcattatcaggtcgct
ccttctgccaccagtccaacagaccgccagctgaggcccaggggcagaaccagtaaaaga
aacaagatgttaaaggagcaggtaaaagccaacaacagccctaacccaactcctaacatg
gagactgagaactcacaggtggcagatacagaatcctcacaaggaagtggaaggactaaa
aggcataatgcctcccaggccttactagtctccaacgtggagaactctgagtcggatgct
tcagagccccgggaggatgtccagaaaggccggaagcccacatcagctggagcggttcca
agccctctggctacagttggatcagcagagcgaggggctgaccaagagattccaatggat
agttctgaaacttctctaaagtcagactcgcaaaacccatcaagtgatgccttagaagtt
gtcaaaattccacaggatgtggaggaagcccttaaaatggtcaactcccttaaacctgaa
gtgctagttccaagtcttcctgtgatgactaagaaagatctggggcagagggagacggac
atggggggtatggttaaggcagttgacccctttgtgccagagaaggctgagagtgaaaat
gctaagctttcttctcaacagacggactcttcagtagaacctgatctagaacatatgaaa
agccaagatgtgtgtatgtctcgacggaagaaggaacgtggacataaatggtcaaaaagc
aaagctaatttcaacacagtctcctctcaggagagtgaccatgatgacctagagtgtgac
aggccaacacagatccaaagaatgctgctcaattactctgagcaggccaactctctcact
ccttccactgaaggaaatgccatctctgaagatggactaaacaaactatgtacacctccc
attgccaatggcctccccacagatacttcacctactgaggcaacagaggagaaactgagt
cttaaggtctctgagtcctcagagaaggttttagatgggctgaagcctgtggctgtctcc
agtgaggaggtgacagaggagcagatgggagaacacgaggagaacagacatccagagtct
gctaccaatgttctagaggaggaccaacgtgaagatgttggcaggtctattgggcaagcc
cagtcagggtgttccaaagccttagatgaggagcaacgggaggagcagtacacatctatc
aaagaaggacagccagaggctgacggcacctctactggaaccagagaaacccacactgag
cctcaggcggacaacattcaagatatcactcctctccaagagagggcaaaaactgacaat
gtatctggcctcgagtgtgaagaggagggtgaagaaacccagatggccaataatgaccta
gatctatctcctttaaactcttttacccttgtgccctctgaccttcacgaagccccagtg
cctctacatcacccaagtacctctaaagacatgttgtgccaagactccccacccaagcag
aaggatactgtgatggggctggaggtgggccatagccccagcagtggcaggaccaggggg
ttgtggtcccccttagcttccccctccacctctatcctgaagaagggacagaaaagacca
atagaagaggagagtccttcgcctttcaccaagtctcgacgagtatcatttgctgaccca
attcaacaccaggagctggcagatgacattgaccgtcgcagccctgtcatccgatccagc
tccccaagaaacaaaactaccagcagcagcatccctcaggcgaagtatatcacaacaccg
acaaagggcttactgatcctcagtccacgcaatctccgcagcccggggtacaagagctcc
aagaaatgcctgatctctgagctgggccaggagccgagacccatccctaaggactgtgtg
tacccggccctggtccgctgttctacccctgtggaagcagtgctgcctcagatcacctcc
aacatgtggcctcgtggctttggccagcttgtgcgagcccggaatatcaaaactgtcgga
gacctcagtgctctcacaccaagtgaaatcaagaaccttcccattcgttccccaaagatt
tctaatgtgaagaaagcacttaaaatataccatgaacagcagcagaagggccgtagtgat
gagctgaagagttttgaggagatggagaagctgacatctgagctggaggagccaactgtt
cctcagaaccagggagaggacaagactccaggagatgccctagtcacagagttgttggat
gagccagtgtccaaggagcacaaggaacatccagaggagagaccggaccagagcaggcct
gaccaccagaagactgctgagggtggtctgctgttggaggtggagtctctggcggctcat
ctgactggggagggattgagccactgctcctctgaccagctggttctgatccatgatcag
ctgggaggcatgatgaggacggtggtgctgcagctgcagagcagactactggctcagaac
aaggacagcggaccctga

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