Oncorhynchus tshawytscha (Chinook salmon): 112225052
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Entry
112225052 CDS
T05605
Symbol
tbc1d4
Name
(RefSeq) TBC1 domain family member 4 isoform X1
KO
K17902
TBC1 domain family member 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112225052 (tbc1d4)
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112225052 (tbc1d4)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
112225052 (tbc1d4)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
112225052 (tbc1d4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
DUF3350
PID
DUF4600
Spc42p
Sipho_Gp157
DUF4249
zf-C4H2
TMPIT
Motif
Other DBs
NCBI-GeneID:
112225052
NCBI-ProteinID:
XP_024244397
LinkDB
All DBs
Position
LG26:773122..924873
Genome browser
AA seq
1276 aa
AA seq
DB search
MEGRDDKGNKESNISKPDIQKFALWYIGWSSLDKRTTLPMLPWLVAEIRKKSEKNESGRE
TCSVQAREVQLVLTPPFIRCVPANNVANSSVFIFEHKAQFISRFIHNSNDLTYFAYLIRS
QPDNPESEMACHVFRAYDPNQVPEVISSIRAVSKSALKEDSKPKRDTEEAFYNSQKFEVL
YCGKVTIGHKKAPSTLIDDCINKFRQHELERKHLRLLNDQRGSTESAPIEFIMGDDGDPL
SSTTHSEGLEDPEGLEVDEVTNRGGSGGKIMSNSPSLGSLRGSFPECILEDSGFEEQQEF
RTRCSSLAGSLQRRPLEGALKAAPARRRHASAPNNVQPSDADKNRTMLFQVGRFEVNLIS
PDSKTVVLEKRFKDISSCSQGINKTDHFGFIFRDPGETGPGQYVCYVFQCASESLVDEVM
LTLKQAFSTAAALQSAKTQVKLCEACPMHDLHKLCERIEGLYPPRAKLAIQKYLSQLTDN
EQVDIFERVQRMKPASDQEENELVILHLRQLCGTKQKSHLHIGEAQLKTPNTTTAPVDST
AVTGGRFKLDILKNKAKSSLTSSLENIFSRGANQMRGRLGSMGGSFERADDSPGDSPPGT
PPSFPDDDPDALQFRRRAHTFSHLPVKKRISFNDASTQGVQQGGTGTHSKALLRRQLSVN
PELLQSSPVPTSRTRSVSESESNFSLSSSFSAPTFLKSFYQGSFGSMGSLADTRTLWSNG
EGRKRTLSGCSSDSVSVPLNIRKVSWRQKIFLRVASPMNKPTSMQHPDHCDVMDLLPLSP
HSFDPSLDPLASLLPTSGDTFTGKRPKRTAVHYRALWKTAIHQQILLLRMEKENQRLEAS
RDELHIRKMKLDYQEVGTCIKDVLAFWDRKLSVPGRAKVVPLDKEEVHNAISKGVPKGRR
GEVWLLFSQQHRLRHRLPPGRHAPDTPYQDLLKQLTAQQHSILVDLGRTFPTHQYFSAQL
GAGQLSLYNLLKAYSLLDTEVGYCQGISFVAGILLLHMSEDQAFDMLKFLMYDLGFRRQY
RPDMTSLQIQMYQLSRLLHDYHRELYSHLEEHEICPTLYAAPWFLTLFASQFPLGFVARI
FDILFAQGSEVIFKVALCLLSSHEGEIVECDSFETIVDYLKTTIPNLTHTQMEETISKVL
DMDISKQLHAYEVEYHVLQDETVDAVLQSNDSDRLDKLEKTNNQLKKQNMDLLEKLQAAR
QKIQSLEATVENFLSRESKMKHMIRSLEQERQSYQKTIERMRSCLPPDALADVEMTHMVK
PAQGPNGKAKPTAKKP
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcgggatgacaaagggaataaagagagtaatatctcgaagccagatattcaa
aagtttgctctctggtacatcggctggtcctccttggacaagcgtactaccctgcccatg
ctgccgtggttggtggcggagatccggaagaaaagtgagaagaacgaatcgggacgggag
acttgttccgtccaggccagagaagttcaactggtgctcaccccgccgtttattcgatgt
gtgcccgcgaacaatgtcgccaactcgtccgtcttcatcttcgagcataaagcgcagttc
atctcacgttttatccacaacagtaatgacctcacttatttcgcctaccttatccggagc
cagcccgacaacccggagtctgagatggcatgccatgtcttcagggcatacgaccccaac
caggtaccagaagtgatcagtagtatccgtgcggtgtcaaagtcggccctaaaggaagac
tccaagcccaagcgggatactgaagaggccttttataactcccagaagtttgaagtgctc
tactgtggcaaggtgactatcgggcacaagaaggctccctccaccctcattgatgactgc
atcaataagttccgccagcatgaattggagcgcaagcacctgcgcctcctgaatgaccag
cggggatccacagaaagcgcccccatagagttcatcatgggggatgacggagaccccctc
tcctcaaccacccacagtgaggggctggaggaccctgaggggctggaggtggatgaggtc
actaacagaggaggttctggagggaagatcatgtccaacagccccagcctgggcagcctg
cgggggtccttccccgagtgcatcctggaggactctggtttcgaggagcagcaggagttc
cggacgcgttgcagcagcctggcgggcagtctgcagcggaggcccctagaaggtgcgctc
aaagccgccccggcacgccgccgccacgccagtgcccccaacaacgtccagccctcagac
gccgacaaaaaccgcaccatgctcttccaggtcggacgcttcgaggtgaacctgatcagt
ccagacagtaagactgtggtgctggaaaagagattcaaagacatctcgtcctgctctcag
ggtataaacaagacggaccactttgggtttatctttcgcgacccgggggagactggtccg
ggccagtatgtgtgctacgtcttccagtgtgccagcgaatccctggtggatgaggtgatg
cttactctgaagcaggccttcagtacggcagcagctctgcagagcgccaagacacaagtc
aagctgtgcgaggcctgccctatgcacgacctgcacaaactctgcgagaggattgagggt
ctgtatcctcccagggccaagctggccatccagaagtacctctctcaactgactgataac
gaacaggtcgacatctttgagcgagttcagagaatgaagcctgcgtcggaccaggaagag
aatgagctggtgattctccacctccgccagctatgtggaaccaagcagaaatcccacctc
cacatcggagaagcccaactgaaaacccccaacaccacaaccgcaccagtggacagcaca
gcagtgacgggcggccgcttcaaactggacatcctgaagaacaaggccaagagctcgctg
accagctcactggagaacattttctcacggggcgccaaccagatgagaggtcgcctggga
agcatgggggggagctttgagagagcggacgactctcccggcgactccccaccaggcacg
ccccctagtttccctgacgacgacccagatgccctccagttccggcgacgtgcccacacc
ttcagccacttgcccgtgaagaagcgcatctcgttcaacgacgcgtccacccagggagtc
caacaggggggcactggtacccacagcaaggctctgctccgtaggcagttgtctgtcaac
cccgaactactgcagagcagccccgtgcccacctcgagaacgcgcagcgtgtcggagagc
gagtccaacttcagtctctcctcctccttctccgctcccactttcctgaaaagcttttac
cagggctccttcgggtccatggggtctttggccgacaccaggaccctctggagtaatggg
gagggcaggaagaggacgctatctggatgcagcagtgacagtgtgagtgtacccctcaac
atccgcaaagtgtcctggagacagaagatcttcctgcgggtcgcctcgcccatgaacaag
cccacatccatgcagcacccagaccactgtgatgtcatggacctgctgcccctctccccc
cactccttcgacccaagtctggaccccctggccagcctactgcctacctcgggtgacacc
ttcactgggaagaggcccaagaggacggcggtgcactaccgggccctatggaagacggcg
atccaccagcagatactgctgctacgcatggagaaggagaaccagagactggaggcaagt
cgagacgagctgcacatccggaagatgaagctggactaccaggaagtgggaacatgcatt
aaagacgtgctagccttctgggacaggaagctgagcgttccgggcagagccaaggtcgtc
ccgttggacaaagaggaggtccacaatgcaatctctaagggtgtccctaagggcaggcgt
ggggaggtgtggctcctcttctcccagcagcaccgcctgagacaccgtctgccccccggc
cgccacgccccagacaccccctaccaagacctgctgaagcagctcacggcccagcagcac
tccatactagttgacctgggtcggacgttccccacccaccagtacttctcagcccagctg
ggtgcagggcagctgtccctctacaatctgctcaaggcctactctctgttagacactgag
gtgggctactgccagggcatcagctttgtggcaggtatcctgctgttgcacatgagtgag
gaccaggcctttgacatgctcaagttcctgatgtacgacctgggcttccgcagacaatac
aggcctgacatgacttctctacagattcagatgtaccagttgtccaggctgctgcacgac
taccacagggagctgtacagccacctggaggaacacgagatctgccccaccctctacgca
gccccatggttcctcacactctttgcctcccagttcccactcggattcgtcgcacggata
tttgatatcctatttgcccaggggagtgaagtgatctttaaggtggctctgtgtctactg
agcagtcacgaaggggagatagtggagtgtgatagcttcgagaccatcgtggactacctg
aaaactacaattcccaacctcacccacacccagatggaggaaaccatctcaaaggtgttg
gacatggacatctcgaagcagctacatgcgtatgaggtggagtaccacgtgctgcaggac
gagacggtggatgctgtgctccagtcaaacgactcagaccgtctggataaactggagaag
accaacaaccagctgaagaaacagaacatggatctgctggagaaactacaggcggcacgt
cagaagatccaaagcctggaggccactgtggagaacttcctgtcacgtgagtccaagatg
aagcacatgattcgctcgctggagcaggagcgccagtcctaccagaagactattgagcgc
atgcgctcctgcctgcccccggacgccctggctgacgtggagatgacccacatggtcaag
cctgctcaggggccaaacggcaaggccaagcccaccgccaagaagccctaa
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