Oncorhynchus tshawytscha (Chinook salmon): 112225064
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Entry
112225064 CDS
T05605
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112225064
03015 mRNA surveillance pathway
112225064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112225064
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112225064
mRNA cycle factors
P-body specific factors
112225064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
Motif
Other DBs
NCBI-GeneID:
112225064
NCBI-ProteinID:
XP_024244415
LinkDB
All DBs
Position
LG26:3903901..3930660
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AA seq
487 aa
AA seq
DB search
MRSETDQMTGGREESVVEIQFRDIPGGQDAVSVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPPYDYFEFFPADQSLYPHLFSRVYINFRNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDSKAGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTKKLIAKRTTPLLEYIKNKKLEKHRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEADKQKKLSEKEIKIKLLKKSDWDDDVDSDRLKDKGDSGDTERAKWDKPSGHMKSK
EIKDPGQMESDKEQREHGRRQRDKDHRGRDEERKRQRHHYEFDKSMRCKEDTKWGKGYCQ
DRAKKDGQYHSSYSYDTCDKVGKEVREDIGGSRKDRVRNKVSDKSVLAYQDRRTSQSEGP
HQIRGALPNKDRPAMQLYQPGAHNRKRVSSAMKGYELPMNRSPEHVAADHCYEAVAMETG
SEKSGDE
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaacggaccaaatgaccgggggcagggaggaaagtgtcgtcgaaatacaa
ttcagagatattccggggggacaggacgccgtctccgtcaactcaaagcagaaagaagag
aagaaggaggtctttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccaccctatgactactttgagttttttcctgct
gatcaaagcctctatccacacctgttctccagagtttacattaacttcagaaaccccgaa
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccagctgtggtagagtttgccccctttcagaaagtctccaagaagaagctcaaa
aagaaagattccaaagctggaagcattgaagaagacccggagtaccggcggtttctggag
aactactcctgtgatgaggagaagtccatggccaaccccgaaaccctgctgggagagata
gaggccaagacaaagaaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcacaggataagagaggagaagagagaggagcgtcgacgcagg
gagctggagaagaaacggcagagggaggaggagaagaggaaacggagggaggaggagaga
cgcaaacgcaaggaggcggataaacagaagaaactatcggagaaggagatcaagatcaag
ctcctgaagaagagtgactgggacgatgatgtggactctgacaggctcaaggacaaagga
gacagtggggacacagagagggccaagtgggacaaacccagtggacacatgaagtcaaag
gaaatcaaggacccgggtcagatggagagcgataaggagcagagagagcacggccgcagg
cagagagacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactac
gagttcgacaagtccatgcggtgcaaggaggataccaagtggggtaaaggctactgccag
gaccgggcaaagaaagatggccaataccacagctcctactcctacgacacgtgcgacaag
gtgggcaaggaggtcagagaggacattggcggtagcaggaaggaccgcgttcggaacaag
gtgagcgacaagtctgtgttagcctatcaggacagaaggacgtcccagtcagaggggcca
caccagatacgaggggctctgccaaacaaggaccggcctgccatgcagctctaccagcca
ggcgctcacaatcgcaagcgcgtgagctctgcgatgaaaggttatgagcttcccatgaac
cgctcgccagaacacgtggcggcggaccactgctacgaggccgtcgccatggaaacgggc
tcggaaaagagtggagacgagtag
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