Oncorhynchus tshawytscha (Chinook salmon): 112225070
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Entry
112225070 CDS
T05605
Symbol
nalcn
Name
(RefSeq) sodium leak channel non-selective protein isoform X1
KO
K21863
sodium leak channel non-selective protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112225070 (nalcn)
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Sodium leak channel, non-selective
112225070 (nalcn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
DUF5914
PsaF
FAM165
Motif
Other DBs
NCBI-GeneID:
112225070
NCBI-ProteinID:
XP_024244424
LinkDB
All DBs
Position
LG26:complement(3028127..3305796)
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AA seq
1752 aa
AA seq
DB search
MCSAGAISALLFPLIHSLYSTASPSMLKRKQSSRVEAQPMTDFGPDETLADSADIFWINK
PWVHSLLRACAIISVISVCMNTPKTFEHYPPLQYVTFTLDTLLMFLYTAEMIAKMHIRGI
IKGDNSYVKDRWCMFDGFMVFFLWVSLVLQVFEIADVVDQMSPWGMLRIPRALIMIRAFR
IYFRFELPRSRITNILKRSGEQIWSVSIFLLFFLLLYGILGVQMFGTFNHHCVTNDTTNG
TVTWNSLAIPDTHCSPDGEGYLCPLGFKCVDLEELGLSRQELGYSGFNELGTSIFTVYEA
ASQEGWVFLMYRAIDSFPRWRSYFYFITLIFFLAWLVKNVFIAVIIETFAEIRVQFQQMW
GSRSSTTSTATTQMFHEDSAGGWQLVAVDVNKPHGRAPACLQQLMRSSIFHMFILTMVAV
DVIVAASNYYKGENHQRHYDEFYLAEVAFTVLFDLEAMLKVWCLGFTGYIISSLHKFELL
LVVGTTLHIYPDLYHSQFTYFQVLRVVRLIKISPALEDFVYKIFGPGKKLGSLVVFTASL
LIVMSAISLQMFCFVEELDRFTTFPRAFMSMFQILTQEGWVDVMDQTLVAVGQMWAPVVA
IYFILYHLFATLILLSLFVAVILDNLELDEDLKKLKQLKQSEANADTKEKLPLRLRIFEK
FPNRPQMVKISKLPSDFTVPRIRESFMKQFIDRQQQDTSCLFRRLPSASSSSCDHSKRSA
IEDNKYIDQKLRRSIFSIRARNLLEKETTINKILRACTRQRMLSGSFEGQPLKERSILSV
QHHIRQERRSLRHGSTSQRISRGKSLETLTQDRESEQRSHWHQHSSTVRYRNAQREDSEI
KMIQEKKEQAEMKRKVQEEELRENHPYFDKPLFIVGREHRFRNFCRTVVRARFNASKTDP
ITGAVNSKYHQLYDLLGLVTYLDWVMIVVTICSCISMMFESPFTRVMHVPTLQIGEYVFV
IFMSIELNLKIMADGLFFTPTAVIRDFGGVMDIFIYLCSLIFLCWLPPNVPPESGAQLLM
MLRCLRPLRIFKLVPQMRKVVREVIKGFKEIFLVSILLLTLMLVFASFGVQLFAGKLAKC
NDPHVFLREDCHGIFRINVSVSKNLNLKLRPGEKKPGFWVPRVWANPRNFNFDNVGNAML
ALFEVLSLKGWVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKGTA
LLTVDQRRWEDLKSRLKIAQPLHLPPRPENAGFRAKMYDITQHPFFKRGIAVLVLAQSVL
LSVKWDVDDPVTMPLATMSVVFTIIFVLEVTMKFIAMSPAGYWQSRRNRYDLLVTILGVI
WIVLHFALLNAYTYMMGTCVIVFRFFTICGKHVTLKMLLLTVVVSMYKSFFIIVGMFLLL
LCYAFAGVVLFGTVKYGENINRHANFSTAGKAITVLFRIVTGEDWNKIMHDCMVQPPFCT
PDKHRYWETDCGNYAGALIYFCSFYVIIAYIMLNLLVAIIVENFSLFYSTEEDQLLSYND
LRHFQIIWNNVDDKREGVIPTSRVKFLLRLLRGRLEVDLDKDKLLFKHMCYEMERLHNGG
DVTFHDVLSMLSYRSVDIRKSLQLEELLAREQLEYTIEEEVAKQTIRMWLKKCLKRIRAK
QQQSCSIIHSLRESQQQELSRFLNPPSIQTTLPSEDINANQDHSTQPELSGLQQLLSPTL
SDRGGYRQDSSERPQRKLGQWRLPAGRTSVKSMVCKMNPVSDEASSGSEVKKWWTRQLTV
ESDESGDDLIDI
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagtgctggagcaatttcagctttacttttccctttgatccactctctgtatagt
acagccagccccagcatgctgaagaggaagcagagctcgagggttgaggcccagcccatg
actgactttgggcccgacgaaaccctcgccgacagcgccgacatcttctggatcaacaaa
ccatgggtgcactctctgctgcgagcctgtgccatcatcagcgtcatcagcgtgtgtatg
aacacacccaagacgttcgagcactaccccccgctgcagtacgtgacctttaccctggac
acgctgctcatgttcctctacaccgctgagatgatcgccaagatgcacatcagaggaatc
atcaagggtgataactcgtacgtcaaggatcgctggtgtatgtttgacggcttcatggtc
ttcttcctctgggtgtctctggtgcttcaggtgtttgagatagcggatgttgttgaccag
atgtctccctggggcatgttgagaatccccagagccctcatcatgatccgagccttcagg
atctacttccgcttcgagctgccacgctcacgcatcaccaacatcctcaagcgatcaggg
gaacagatctggagtgtgtcgatattcttgctcttcttccttcttctgtatggaattctg
ggagttcagatgttcggaacgttcaatcatcactgtgttaccaacgacacaacgaatggt
actgtgacatggaacagcctggccatccccgacacccactgttcgccagacggggaggga
tacctgtgtcctttgggctttaagtgtgtggacttggaagaactggggctcagcagacag
gagctgggctacagcggcttcaacgagctcggtaccagtatcttcaccgtgtacgaggca
gcctctcaggagggctgggtattccttatgtacagagccattgacagtttccctcgctgg
cgctcctacttctacttcatcacgctcatcttcttcctcgcctggcttgtcaagaatgtt
ttcattgcggtcatcattgaaacgtttgctgagatcagagttcagttccagcagatgtgg
gggtcccgaagcagcaccacctctactgctaccacacagatgttccacgaggactcggct
ggaggatggcagcttgttgctgtggacgtcaacaaaccacatggccgcgcaccagcctgc
ctccagcaactgatgcgctcctctatcttccacatgttcattctgactatggttgccgta
gacgtaatcgttgccgctagcaactactacaagggcgagaaccaccaaaggcactatgac
gagttctacctggctgaggttgcctttacagtgctgtttgacctggaggctatgcttaag
gtctggtgcctgggcttcacgggctacatcatctcctctctgcacaagtttgagttgctg
ctggtggtggggaccaccctgcacatctaccctgacctctaccactcccagttcacctac
ttccaggtactgcgagtggtgcgtctgataaagatctccccggcactagaggactttgtg
tacaagatatttggtcccggtaagaagctgggcagcttggtggtgttcacagcgagcctg
ctcatagtcatgtcagccatcagtctacagatgttctgcttcgtggaggaactggaccga
tttaccacctttcccagagcattcatgtctatgttccagatcttaacccaggagggttgg
gtggatgtgatggaccaaactcttgtggctgttggtcaaatgtgggctcctgttgtggct
atctacttcatcctctaccatctgttcgctactctgattctgctcagtcttttcgtggct
gtcatccttgataatctagagttggatgaagacttgaagaaactcaaacaactgaagcaa
agtgaggcgaacgcagataccaaagagaagctgcccctacgtctaaggatctttgagaag
tttcctaatcggccccagatggtcaagatctccaagctgccttctgatttcactgtgccc
agaatcagggagagtttcatgaagcagttcatcgatcggcagcagcaggacaccagctgt
ctgttccgccgccttccttccgcatcctcctcttcctgtgaccattccaagcgatccgcc
atagaagacaacaaatacatcgaccagaagctccgcaggtcaatattcagcatcagagct
cgcaacctcctggagaaggaaactactatcaacaaaatcctccgggcttgtaccagacag
cgtatgctgagtggatcctttgagggccaaccactgaaagagcgctccatcctcagtgtc
caacaccatatacgccaagaacgcaggtctctgagacatggctccactagtcagaggatc
agcagaggaaagtccctggagacactcacacaagatcgagagtcagagcagagatcgcac
tggcaccagcattccagtacagtgcgttatcgtaacgcccagcgagaagatagtgagatc
aagatgatccaggagaagaaggagcaggccgagatgaagcgcaaggtccaggaagaggaa
ctgagggagaaccatccttactttgacaaacctctcttcattgtggggagagagcaccgc
ttcagaaacttctgtaggactgtagtgcgggcacgcttcaatgcatccaaaacagatcca
ataacaggagcggtgaactccaaataccaccagctttatgatctcctggggctggtcacc
tatctggactgggtgatgatcgtagtgaccatctgctcctgtatctccatgatgtttgag
tctcctttcaccagggtcatgcatgtacccactctacagataggagagtatgtctttgtc
atcttcatgagtatcgagctgaacctgaagatcatggcggacggcctgttctttactcct
acagccgtcatcagagactttggaggagtcatggacatcttcatctacctctgtagtctg
atcttcctgtgttggctgcctcctaacgtgcctccggagtctggggctcagctgctgatg
atgctgaggtgtcttcgcccccttcgcatctttaaactggtgccccagatgaggaaggtg
gtgcgggaggtcatcaagggtttcaaggagattttcctggtctccatcctgctcctgaca
ctaatgctggtgtttgcaagcttcggcgtccagctctttgctggaaaactagccaagtgc
aatgacccccacgtattccttcgggaggactgccatggaatcttccggatcaacgtgagt
gtgtctaaaaacctcaatctcaaactaagaccaggagagaagaagcctggcttctgggtg
ccaagagtgtgggccaaccctcgcaactttaattttgacaatgtgggtaatgccatgctg
gctttgtttgaggtcctgtcactcaaaggctgggtggaggtccgtgatgtcatcattcac
cgcgtcggaccgatacatggtatctacatccacgtgtttgtttttctgggctgtatgatt
ggactcactctgtttgtcggagtggtcatcgctaacttcaatgagaacaagggtactgct
ctgctgacagtggaccagaggaggtgggaggacctgaagagtcgactgaagattgcccag
cctctccacctccccccacgcccagagaatgcagggttccgtgccaagatgtatgacatc
actcagcaccccttcttcaaacggggtatcgctgtgctggttttggcccagtcagtgctg
ctgtctgtcaagtgggatgtagatgacccagtaacaatgccacttgctaccatgtcagtg
gtcttcaccattatctttgtgttagaggtgacgatgaagttcatagctatgtccccggcg
gggtactggcagagcagacggaaccgctacgatttactggtgacaatactgggagtcatc
tggatagtcttgcactttgctctactgaatgcatatacttacatgatgggcacgtgtgtg
atcgtcttcaggttcttcaccatctgtgggaagcatgtgactctgaagatgctactgctg
accgtcgtggtcagtatgtataaaagcttcttcatcatcgtgggaatgttccttctcctc
ctctgctacgccttcgctggagtcgtcctattcggaaccgttaaatacggagagaacatc
aacaggcatgctaacttctccacggcagggaaggccatcacggttctgttccgtattgtc
acgggggaagactggaataagatcatgcatgactgcatggtgcagcctccgttctgtacc
cctgataagcatcgctactgggagacggactgtgggaactacgcaggggcactcatctac
ttttgctccttctatgtcatcattgcttacatcatgcttaacctcctcgtggccatcatt
gtggagaacttctctctcttctactccactgaggaggaccagctactgagctacaacgac
ctccgacactttcagattatctggaacaatgtggatgacaagagagagggagtgatccca
acatcgcgggtgaaattcctgctgcgtctgctgaggggcaggctagaggtagacctggat
aaggacaagctgctattcaaacacatgtgctatgagatggagaggctgcacaacggaggg
gacgtcaccttccacgacgtgctcagtatgttgtcataccgttcagtggatatcaggaag
tctctacagctggaggagctgctggctagagagcagctggagtacaccatagaagaagag
gtggccaagcagaccatacgcatgtggctcaagaagtgcctcaaacgcatccgtgctaag
cagcagcagtcgtgcagcatcatccacagcctgagagagagccagcagcaggagctcagt
cgcttcctcaacccccccagcatacagaccaccctgcctagtgaggacatcaacgctaac
caggaccattcaacacagccagagttgagtggtctccaacagctgctgagtcctactctg
tcagaccgtgggggatacagacaggactcctcagaacgccctcagaggaaactgggacag
tggagactacctgcaggtcgtaccagtgtcaagtccatggtgtgtaagatgaaccctgtg
agtgacgaagcctcctcggggtcagaggtcaagaaatggtggacgcgtcagctgaccgtt
gagagtgacgagagtggtgatgacctcatagatatttaa
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integrated database retrieval system
