Oncorhynchus tshawytscha (Chinook salmon): 112225081
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Entry
112225081 CDS
T05605
Symbol
sntb1
Name
(RefSeq) beta-1-syntrophin isoform X1
KO
K24064
beta-syntrophin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112225081 (sntb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_17
PDZ
PH
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
112225081
NCBI-ProteinID:
XP_042171658
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MAVATVISRNGLQKSGFLEVLVRDRWHNVLANLNEEALTLSCEDLGENVTLNGLTNGSYG
CNATHPDHTNSSKTAVRTAFTDLQEQVPEAIANRKRCVKVIKQEVGGLGISIKGGKENKM
PILISKIFKGLAADQTQALYVGDAILSVNGVNLRDATHDEAVQGLKRAGREVTLEVKYMR
EASPYVKKGSPVSEIGWETPPPESPRLGSPHCDVPVTPTMSLQGDRRYIPLKMCYVTRSM
TSPDPGNRQLELHSPDAKHTVVLRCRDTASAQAWFEVMQSATSNLIDKVITEVKEHTGRT
GIAGSREIRHLGWLAEKTESEKQQWKPVLVMVTEKDLLLYHSLPRMKASWHSPAHTYPLL
ATRLVHSGPDRGSPQPGVELSFATRTGTRLGIEAHLFRAETCQDLSLWTRHIVTGCHSSA
QMIKEVTTSCVYKGQECRLVIHYEQGFSVLAEQKGEDQVDQGNQNQAKPLLCYPFERLKM
SSDDGVRLLFLDFSGKEGEIQLDLHSCPKPIVFILHSFLSAKIARLGLVA
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagctacagtaatttcgaggaacggactacaaaaaagtggatttttggaggtt
ttagtgagggaccgatggcacaatgttttggccaacttgaacgaagaagctctaacgttg
agttgcgaggacctgggagagaatgtgaccctaaacggcctcaccaatggatcttacggg
tgcaacgcaactcacccggatcacacaaacagttcgaaaactgcggtgaggacagctttc
acggatttacaggagcaagtcccagaggcgatcgcaaacagaaaaagatgcgtgaaagta
ataaagcaagaggtaggaggactcggcatcagcataaagggaggaaaagagaataaaatg
ccgatacttattagtaagatcttcaaaggtctagctgcggatcaaacccaagccttgtat
gtcggtgacgcgattctgtcggtgaacggtgtgaacctgcgggacgcaacgcatgacgag
gcggtgcaggggctgaaacgagccgggagagaggtgacgctagaagtgaagtacatgaga
gaagccagcccctatgtgaagaagggttctcctgtgtcagagataggctgggagacgccc
ccacctgagtccccgaggctgggtagcccccactgtgacgtccccgtcacccccaccatg
tccctacagggggacaggaggtacatccccttaaagatgtgttacgtcaccaggagcatg
acttctccagaccctggaaacaggcagttagagctgcactctccggacgccaagcatacg
gtggtgttacggtgtagagacacagcctcggcccaggcctggttcgaggtcatgcagtcg
gcgacctctaacctcatcgacaaggtcatcacggaggtcaaagagcacacaggaagaaca
ggaatcgcagggagcagagagatcagacacctgggctggctggctgagaagacagagagt
gagaagcagcagtggaagccagtgctggtgatggtgacagagaaagacctgctcctctat
cacagccttccacgcatgaaggcttcctggcacagccctgcacacacatacccactgtta
gctacacggctggtgcactctggtcccgaccgaggctctccccagccgggcgtggagctg
tccttcgccacacgtacggggaccagactgggcatcgaggcccacctgttcagagctgag
acctgtcaggacctttcactgtggaccaggcacatcgttacgggctgtcactcctctgcc
cagatgatcaaagaagtcactaccagctgtgtgtacaagggccaggagtgcaggctggtg
atccactacgagcagggcttctctgtcctggctgagcagaagggggaggaccaggtggac
caggggaaccagaaccaagccaaacctctcctctgctaccccttcgaacgcctcaagatg
tcctccgacgacggggtcaggttgctcttcctggatttcagtggaaaagagggtgaaatt
cagctggacctccactcgtgcccgaagcctatcgtcttcatcctccactcattcctctcg
gcaaagatcgccagactcggcctggtagcataa
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