Oncorhynchus tshawytscha (Chinook salmon): 112225087
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Entry
112225087 CDS
T05605
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112225087
00535 Proteoglycans [BR:
otw00535
]
112225087
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112225087
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112225087
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
112225087
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112225087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
3keto-disac_hyd
DUF1554
Motif
Other DBs
NCBI-GeneID:
112225087
NCBI-ProteinID:
XP_024244477
LinkDB
All DBs
Position
LG26:complement(5559420..5738463)
Genome browser
AA seq
1617 aa
AA seq
DB search
MWDSQEGTVLPTDLTGLAENVNVLAGKENEMLGIVKVDLAERVLDKHNRTAEWNATVFPI
DSQPVPSVNVSLETTPSNRSSNRVIDSSSSWNANNFNSTEYSDEYTVSGDFLTPFDSNHS
LLATSETPAPESPRCWPIDFHLPFCKSMGGDSFVLPNYFNHSSVKEVQAVLGSWAWLLRS
RCHHSLEWFFCLLLLPRCPRGLPPPLPCRSFCEVLQDSCWTVLDEGSLPMECHSLPDEDD
GYQCLSVSNQKDEIGVSLLQLIGDPPPDEITKIYGPDNSPGYVFGPDANTGQLARAHLPS
PFYRDFSLLFNLKPQSTKGGVIFSVTDASQKIMYVGVKLSPVKANKQNVIFYYTEPDSQV
SYVAATFPVHNLADQWNRFSISVLDDKITFYINCDDQPQVVRFERSPDEMALEAGAGVFV
GQAGGADPDKFLGVIGELRVVGNPRAAERQCEEEGDDSDVASGDGGSGDVEGKLDGKKKG
SGTFKWDAEVQKNVWVEDDRPTVTTTPPSSRPIQQPPVTRQQPEVSPKKETGPGGSRGEK
GDRGEKGDRGPFGPKGDSGSESGTRGGARGEKGVPGEKGMKGKAGFGYPGSKGDPGPAGP
PGPPGSPGPAAEVVSRGDSSVIQTVAGPRGPAGTPGPAGPEGPAGADGEPGDPGEDGSQG
LVGPPGFPGTPGDSGLKGEKGDRGEGQPGPSGPPGPPGLPAPSSHDRPTFVDMEGSGFPD
LEALRGLPGLPGPPGLPGAPGPSVVGTGLSSSFGPQGPPGQDGAPGQPGLPGPPGTDGRP
AVAGARGEKGDPGELGLPGAVGAKGAQGLTGIPGQPGLGGLAGLPGPMGPVGQPGPPGPP
GPSYHAGFDDMEGSGVGVANGVPGARGPDGRQGTTGIPGLPGKPGFPGAPGEMGNEGLQG
RDGRPGLDGFPGPNGQKGDRGERGETGRDGNGQPGPPGPPGPPGQIIYQTSSSYDGVVGG
AGPQGETGLPGQAGFPGPIGSKGDKGDPGQPGYGVKGEKGEPGLIIGPDGSPLYLRELSG
EKGDRGPAGPVGPPGQYGPSGIKGEFGMPGRPGRPGVNGYKGEKGEPSTGAGFGYPGVPG
PPGPPGPPGPAVPVDRFNGYDASRNYPATKGEKGDRGAQGLPGTPGVASNLDIFTFKNDL
KGERGDSGMKGEKGEPSGGYYDPRFRGQQGPPGPPGNPGLMGPKGDSIMGLPGPQGPPGS
PGIGYDGRPGIPGPPGPPGPPGSPSLPGAYRPNHSINIPGPPGPAGPPGTPGHTSGVTVL
RSYDTMIATARRQSEGTLIYIVDKTDLYIRVRNGFKQVLLGDYSPFYRDLDNEVAAVQPP
PVVNYPQSQDHSANNGAEHFSQGGTATLPIKPPPHKPVEIPRPARPDNRNPDPRYPPQYD
PRYPPQTDARYPPQTDGRYSHVQPENRYPNQPESRFPVTPQRRPVPLPVPQPGGHLHTSG
PGLHLIALNMPQVGNMRGIRGSDFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRD
SLPIINLKDQVLFNSWESMFSKTGGRMKENVPIYSFDGRDILRDSAWPEKMVWHGSSNEG
HRQTDNYCETWRAGDHEVTGLASSLQTGQLLQQLPSSCSSSYIVLCIENSSLSHSKK
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgtgggatagccaggagggaacagttttacccacagacctcaccggtttagcagagaat
gtcaatgtgcttgcagggaaagagaatgagatgctgggtattgtcaaggtggacctagca
gaacgtgttttggataagcacaacagaacagctgagtggaatgctacggttttccccata
gacagtcagcccgtcccaagtgttaatgtctctcttgagacaactcccagtaacagaagt
agcaacagagtaattgacagtagctctagttggaacgccaataattttaactcgacagag
tattctgatgaatacactgtctcaggtgattttctaaccccttttgacagcaaccactct
ctcttagctactagtgagacgccggccccagaatccccacgttgctggccaatagatttc
catttgcctttctgcaaatccatgggtggcgacagttttgtgttgcccaactatttcaat
cacagcagtgtgaaggaggtccaggctgttttgggctcttgggcgtggctcttgaggtca
cgctgccaccatagcctggagtggtttttctgcctgctgctgttgcccaggtgcccccgg
ggcctgccaccgcctttgccttgccgcagcttctgcgaggtcctgcaggacagctgctgg
acagtcctcgatgagggcagcctccctatggagtgccactctttgcctgatgaggacgat
gggtatcagtgcttgtcagttagtaaccagaaagatgagatcggtgtctccctcctgcaa
ctgatcggggaccctcccccagacgagatcaccaagatctatggtcccgacaacagcccc
ggctacgtcttcggtcccgacgccaacacgggccagttggcacgtgcccatcttcccagc
cccttctaccgggacttctccctcctcttcaacctgaagccccagtccaccaagggcgga
gtcatcttttcggtcacagacgcctcgcagaagatcatgtatgtgggcgtcaagctgtcg
ccggtcaaagcgaacaagcagaatgtaatcttctactacacggagcccgattcgcaggtg
tcgtacgtggcggccaccttccccgtgcacaacctggccgaccagtggaaccgcttctcc
atctccgtgctggacgacaagatcaccttctacatcaactgcgatgaccaaccccaggtg
gtacgcttcgagaggtccccggatgagatggcgctggaggccggagccggggtgttcgtg
ggccaagccggaggggccgatcccgataagttcctgggggtgattggggagctgagggtt
gttggaaacccccgggctgctgaaagacagtgtgaggaggaaggggacgactcggatgtg
gcttcaggagatggcggaagcggcgatgtggaagggaaactggacgggaagaagaaaggc
tcgggtactttcaaatgggacgcggaggtacaaaaaaatgtgtgggttgaggacgacaga
ccaacagttacgactacccctccgtcgtcacgcccgattcagcagcccccagtgacccgg
caacaaccagaggtgtctcccaaaaaagagactggcccaggtggatctagaggagagaag
ggtgacagaggagagaaaggagacaggggtcctttcggtccaaagggagattctgggtct
gagtcgggcacacgaggaggggcacgtggagagaagggtgtgcctggagaaaagggaatg
aagggaaaagcaggcttcggataccctgggtcgaagggcgaccccggccccgctggtccc
cccggaccaccaggctccccggggcccgcggctgaggtggtatcacgtggcgacagctcc
gtgattcagacggttgcgggtcccagaggaccagctggaactccgggacctgcaggccct
gaggggcccgcaggagccgacggagagcctggtgatcctggtgaagatggttctcaaggc
cttgttggaccgccaggcttccctggaaccccaggagactctgggctcaaaggagagaag
ggtgaccgtggtgagggccagccgggccccagtggacctcccggacccccaggactccca
gcgccatccagtcacgaccggcccacctttgtggacatggaaggctctgggttccctgac
ttggaggctcttcggggactgcctggtttgcctggccctcctggactccccggggcccca
ggtccttccgttgttggtacagggctctctagctcgtttggcccccaaggtcccccaggg
caagatggtgcccctggtcaaccggggttacccggcccacctggtactgatggtcgccca
gcagttgcaggggccaggggagagaagggtgacccaggtgaactcggtcttccgggagca
gtcggcgcaaagggcgcacagggattgactggtatccctggtcagcctggactgggcgga
ttggctggccttcctggaccaatgggaccagtgggacaacccgggccaccaggacccccc
ggaccaagctatcacgctggctttgatgacatggaaggctctggtgtgggagtggccaat
ggggttcctggagcccgagggccagacgggcgacagggtactactggcatccctggccta
ccgggaaagcctggtttccccggtgcccctggcgagatgggaaatgaaggactacaagga
agagatggccgaccagggttggacggtttccctggacctaatggacaaaagggggacaga
ggagaaagaggcgaaactggtcgcgatggaaatggacagcctggaccaccaggcccaccc
ggcccaccaggacaaataatctaccagacctccagcagctatgatggtgtcgttggagga
gctgggccccagggtgaaactggtctacctggccaagctggattccctggtcctattgga
tcaaagggcgacaagggagacccaggacagcccggttatggagtcaagggcgagaagggc
gagcctggcttaatcattgggcctgatgggagtcctttgtacctgcgagaattgtcgggt
gagaagggagacagaggacctgccggacccgtcgggcctcctgggcagtatggaccttct
gggataaagggtgaatttggaatgcctggaagacctggtcgccctggtgtaaacggatac
aagggtgaaaaaggagagccatccacaggtgccggatttggctacccaggtgtcccaggc
ccacccggacccccaggacctcccggaccagctgtgcctgtggaccgcttcaacggatat
gacgcctcaaggaattatccagcgacaaagggggagaaaggtgatcgcggagctcaaggt
ctcccaggaacgccaggtgtggcctctaacttagacatattcacattcaagaatgacctg
aaaggagagcgtggggattctggcatgaagggggagaagggagagccaagtggtggctat
tatgacccccgttttagaggacaacaaggcccaccaggaccccctggaaacccaggactt
atgggtccaaagggagattcaatcatgggcctccctggtccccagggcccaccaggctcc
ccagggatcggctacgatggtcgtccaggaatcccaggcccaccaggtcctcccgggccc
ccagggtccccctcactaccaggggcctatagacctaaccactccatcaatattcctggc
ccccccggacctgctggaccacctggaactcctggtcacacttcaggggtgacagttttg
aggtcatacgacaccatgattgctactgcaagacgccagtcggagggcaccctcatctac
attgtcgacaaaacagatctctacatccgagtccgcaatggattcaaacaagtcctgctc
ggtgactacagtcccttctacagagatctggacaacgaagtagcagctgtccagcccccc
cctgtcgtcaactacccccagtcccaggatcactcagccaacaatggagctgaacacttc
tcccaaggcggtaccgccaccctccccatcaagcctcctcctcacaagccggtggagatc
cccaggcctgccagacccgacaaccgcaaccccgaccccagatatccccctcagtacgac
cccagatatccccctcagactgacgctaggtacccccctcagacagatggccgctacagc
catgtgcagcctgagaacaggtatcccaaccagcccgaaagccgattcccagtcaccccc
cagagaagacccgttccccttcctgttccccagcctggcggtcacttgcatacatcaggg
ccaggactccacctgatcgccctgaacatgccccaagtgggcaacatgcggggcattcgt
gggtcagacttcctgtgtttccagcaggctcgtgctgtgggcctgaagggcaccttcagg
gctttcttgtcctccaagctccaggacctctacagcattgttcgcaagtccgacagagac
agcctccccatcataaacctgaaggaccaagtgctgtttaatagctgggagtctatgttc
agtaagactgggggcaggatgaaggaaaatgtaccaatctactcctttgatggcagagat
atccttagggacagtgcatggcctgaaaaaatggtctggcacggctctagtaatgagggt
caccgccagactgacaactactgcgagacatggagggccggagaccacgaggtgacaggt
ctagcgtcctcactgcagaccggccagctcctacaacagttgcccagcagttgctctagc
tcctacatagtgctgtgtatcgagaacagctctctctcacactccaaaaaataa
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