Oncorhynchus tshawytscha (Chinook salmon): 112225165
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Entry
112225165 CDS
T05605
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112225165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112225165
Spliceosome [BR:
otw03041
]
Complex A
U1 snRNP components
U1 related factors
112225165
Complex B
112225165
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GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
112225165
NCBI-ProteinID:
XP_024244613
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Position
LG26:complement(11791243..11822831)
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AA seq
891 aa
AA seq
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MSSDGNNGQSQAPPFAGVPTSGMPPPFMGPPGMPPHYPPMGIPPMGQRPPNMAPMPPGMM
PPGMMPPMGQIPGMMPPMMPGMMMPPHMSAAAMQPTGPPGVDTTVTAAPGTVGTTNGTPQ
DDQPKKKSVWTEHKSMDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYKSDNGK
AYYYNSQTKESRWTKPKELEDLEAMIKAEENGTSEVGAPCAVNAPTLQPDSAAVMATMMM
EMPVMMPITTVLEEQMSQVPMHVAEVSAEAPVNSTEEAVGMEASASNDASKDERPELVKK
TYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKV
QTEKEEKEEARLKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPERDRLE
IYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAED
EELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQ
LHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKNFLVEVNTSFEDFGSVISSDKRAMTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEATFKSMLKQATPALEPEATWEGVRERFLKESAFEDVTLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSRSRSGSESDGEDDYHNKKKKRSQSKSPSE
RSSSGESERSYKKSKKHKKKGKKRRHKSQSPESEGERKDKGRERDSKREKDQEKEKESDK
SRGKSRSDSKQKSPKRKPTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcacctccttttgctggggtcccaacc
tcaggcatgccaccgccttttatgggaccaccgggaatgccgcctcattacccaccaatg
ggaattccacccatgggacagaggcctcccaacatggctcccatgccgcctggcatgatg
ccacctggcatgatgccaccgatgggacagataccaggcatgatgccacctatgatgccc
gggatgatgatgccccctcacatgtctgctgcggcgatgcagccaacaggaccgcctgga
gtggacacaactgtcactgctgcgcctggaacagttggtaccacaaatggcacgccacag
gatgaccaaccaaagaagaagtctgtgtggacagaacacaagtccatggatgggaagacc
tactactacaacaccgagaccaagcagtcttcctgggagaagcctgatgacttgaaatct
cctgcagaacaaatgctgtcaaaatgcccatggaaggagtataaatcagacaatggcaag
gcgtactactacaactcccagactaaggagtcccggtggaccaaacccaaagagcttgaa
gatctagaagctatgataaaagccgaggagaatgggacatcggaggtaggcgctccttgc
gctgtaaacgcccccacccttcagcctgacagtgctgctgtcatggcgaccatgatgatg
gaaatgccggtcatgatgccgattacaacagttttggaggaacagatgtcccaggtgccc
atgcatgtagcggaggtcagcgctgaggcgcctgtgaactccacagaagaagcggtcggc
atggaggcctcagccagtaatgacgcttcaaaggatgagaggccagagctggtgaagaaa
acgtacaagtggaacacgaaagaagaggccaagcaggcctttaaagagctcctgaaggag
aagggtgtttcatccaatgcgtcttgggaacaagccatgaaaatgatcatcaatgaccca
cgctacagtgccctgcccaaattaagcgagaaaaagcaggccttcaatgcttacaaggtg
cagacagagaaagaggagaaggaggaggccagactcaaatacaaggagtccaaggaaacg
tatcagagatttttggagaatcacgagaaaatgacatctaccaccagatacaagaaagca
gagcagatgtttgcagagctggacgtgtggagcaccgtcccagagagagaccgactggag
atctatgaagatgtcctattctacctggccaagaaggagaaggagcaagccaagcagctg
aggaagaggaactgggaggcgctgaagaacatcctggacaacatggccaacgtgacctac
cgcaccacctggtccgaggcccagcagtacctgctggacaaccccaccttcgcagaggac
gaggagctccagaacatggacaaggaggatgctctgatctgtttcgaggagcacatccgc
gcgctggaaaaggaggaggaggacgagaagcagaagactttgctgagggagaggaggaga
cagcgcaagaacagagagtccttccagaaattcctggacgagctccatgaccacggtcaa
ctccactccatgtctgcctggatggagatgtaccccaccgtcagctcagacatccgcttc
gccaacatgctgggccagccagtttatggtgtctattctgcaggctccactcccctcgat
ctgttcaagttctatgtggaagacctgaaggctcgctaccacgacgagaagaggatcatt
aaggatatcctgaaggacaaaaacttcctggtggaggtcaacactagctttgaagacttt
ggctctgtgatcagctcagacaagagagccatgacgctggacgcaggcaacatcaagctg
gccttcaacagtttgctggagaaggcagaggctcgggagagggagcgggagaaggaggag
gccaggaagatgaagaggaaagaggctacctttaagagcatgttgaagcaggccaccccg
gccctggaaccagaggccacctgggagggggtccgagaaaggttcctcaaagaatctgcg
ttcgaagacgtgactctggagtctgagaggaaaaggatattcaaagacttcatgcatgtc
ttggagcacgagtgccagcatcatcactccaagaccaagaaacattccaagaagtccaag
aagcaccaccggaagcgctcccgctcccggtctcgatcgcgatcgggctcggagtctgat
ggtgaagacgattatcacaacaagaagaagaagcgctcacagtccaagtccccgtccgag
cgttcctccagcggtgaatctgagagaagttataagaagtccaagaagcacaagaagaag
ggaaagaagaggcgtcacaagtcgcagtctcctgaatctgaaggggaacgaaaagataaa
ggaagagagagggacagcaagcgtgagaaggaccaggagaaggagaaagagagcgacaag
tcccgggggaagagtcgctctgactccaagcagaagtctcctaaaaggaaacctaccaag
gaggagggtggctgggacacatcaggcagcgagctgagtgaaggagagctggagaagagg
aggaggactctactagaacagctggatgctccttaa
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