Oncorhynchus tshawytscha (Chinook salmon): 112225256
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Entry
112225256 CDS
T05605
Symbol
stxbp5l
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112225256 (stxbp5l)
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112225256 (stxbp5l)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
112225256 (stxbp5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR19_1st
Lgl_C
Beta-prop_VPS8
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Synaptobrevin
PEP5_VPS11_N
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
112225256
NCBI-ProteinID:
XP_042162709
LinkDB
All DBs
Position
LG26:15320671..15540397
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AA seq
1263 aa
AA seq
DB search
MKKFRKVLDGLSSSSPGGVASPSCGSAAGTPTAHAPTPQDIHVQETLVSENFQICKTVRH
GFPYQPTCLAFDPVQKILAIGSRTGGIRILGRPGVDCYSQHESGAAVLQLQFLINEGALV
TACADDTLHLWNLRQRRPAILHSLKFNRERITFCHLPFQSKWLYVGTERGNTHIVNIESF
VLSGYVIMWNKAIELATKAHPGPVVHLSDSPKDEGKLLIGFESGTVVQWDLRAKKVDFRI
YYDEAIHSVSWHHEGKQFMCSHSDGSLTMWNLRNTARPIQITYPHGKILKDGRKESCKPI
LKVEYKTSRNSSEPYVIFSGGLSYDKSGGRRPTLTIMHGKAITVLEMDHPIVEFLVLCDT
PYSNEVQDPYAVVVLLEKDFIVVDLTQSNFPIFENPYPMDIHESPVTCTAYFAECPPDII
PILYSIGAKQKKTGYSHKEWPVSGGTWTLGSQTYPEIIVTGHADGTVKFWDASAITLQML
YKLKTSKVFEKPKAGEGRAGELVEEDPYAVQMVSWCPHSRLFCVVGISAHVILYRFSKHD
ANTQIVSLEVRLQFDSEDVISPSEAENNPCFSDPSSHSPQPPGSPGSGTQDSLPCLKVKS
RPVRMPPGYQAEMVVQLQWVDGEPPQQITSLDINSAYGLLAFGNCNGLTVVDFLQKTILM
CMGTLDLYGAADPYQRLTRSPRKNRQSTSDFCMRGLSHFYSDSKKRIRTSYQSLTELSDN
QVSMDMERSKSPTSVPYPSSLHYDPRSMPEPVASLRASHCSPVFYLLDNVKGPGRKLSLP
TDLKTDLDHVNGHCTSPTSQPCSVGKPRITGVPEGPRLTRRGPGRPPFRKAQSAACMEIS
LPVSSHTEGGHASRRAMLQQLHGVSMYSHDEHHTTSYNWSERESRENSFSRSRSSSVSSI
DRDTKESVTTLQFGESYGRKGDALPTACLWVGTSLGVVLLLPISIPTEEEERMEEPITMG
PSGTVLMLKGSVLRFAFLDCGGALIQSPYEVWRDPNGPEDPDRPRRRKLINFSPSSSQEA
CGDGHLAVVCSEKQAKVILMPTQAVLFTHNITESSFLLRADVVSVCNSVCLACFCANGHI
MTLSLPSLRPLMDINYLPLTDLRIARTFVFTNGGQALYLSSPTEIQRLTYSQEMTDNLQD
MLGELFTPIETPEAQNKGFLKGFFGGNAQTFDREELFGEAAAGKASRSLAQHIPGPMGLE
NMKAAAGGVVGDLARARIALDQRGERLGELEERTALMMNSAETFSTHAHQVMLKHKDKKW
YQL
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttcgaaaggtactggacggcctgtcatcctcctccccggggggtgtcgcg
tccccctcgtgcggcagtgcagctggtaccccgaccgctcatgcgcccactccccaggat
atccatgtccaggagacgctagtctcggaaaactttcagatatgcaagacggtacgccat
ggcttcccgtaccagcccacctgcctggcctttgatcccgtccagaagatcctggccatc
ggctccagaacaggaggcattcggatcctgggacggcctggtgtggactgctatagccag
catgaaagtggagccgctgtcctccagctacagttcctcatcaacgagggggcgctggtt
acggcatgtgcagatgacacgctacacctgtggaaccttcgccagagacgcccagccatc
ctgcactcgcttaaattcaacagggagaggatcactttttgccacctccccttccagagt
aaatggctgtacgtgggcacagagcgtggcaatacacacatcgtcaacatcgagtccttc
gttctgtctggatacgtcatcatgtggaacaaggccatagaattagcaactaaagcacat
ccagggcccgtggtccatctgagtgacagcccgaaggatgaaggcaagttgctgataggg
tttgagagtggaacagtggtccaatgggacctccgagccaagaaggttgacttcagaatc
tactacgatgaggctatccattctgtgagctggcatcacgaggggaagcagttcatgtgc
agccactcagatggcagcctgactatgtggaacctgagaaacacagccaggcccattcag
atcacctaccctcacgggaagatactgaaggacgggaggaaagagtcgtgtaagcccatc
ctcaaggtggaatacaagacctccaggaacagcagtgagccctatgtcatcttctctggg
ggtctgtcatatgacaagtccggtggaaggaggcccaccctgaccatcatgcacggcaag
gccatcacagtgctggagatggaccaccctatcgtagagttcctagtactctgtgacacc
ccatactccaacgaggtccaggatccttatgcggtggttgtgcttttagaaaaggacttc
atcgtggtggatctgacacagagcaacttccccatctttgagaacccctacccaatggac
atccacgagtctcctgtcacctgtacggcttacttcgctgagtgccctcctgacatcatc
cccatcctctactccataggggccaagcagaagaagactggctacagccacaaggagtgg
ccagtgagcggtggcacatggacactaggctcacaaacctacccagagatcatcgtcaca
ggacatgcagacggaaccgtaaagttttgggacgcctctgctattacactgcagatgctg
tacaagctgaagacgtctaaggtgtttgagaagcccaaggcgggagagggtcgggcgggc
gagctggtagaggaagacccctacgccgttcagatggtcagctggtgcccacatagccgt
ctcttctgtgtggtgggcatttctgcccacgtcatcctctaccggttcagcaaacacgac
gccaacacgcagatagtgtcactagaggtgcgcctgcagtttgattcagaggacgtcatc
tccccgtcagaggcagagaacaacccgtgtttctcggaccccagttcccactccccccag
ccgcccggtagccctggcagtggcacacaggacagcctcccctgcctcaaggtgaagagt
cgcccagtgcggatgcccccggggtaccaggctgagatggtggtgcagctgcagtgggtg
gatggagagcccccccagcagatcaccagcctggacatcaactctgcctacggcctccta
gcgtttgggaactgtaatggtctaacggtggtggacttccttcagaagacgatcctgatg
tgtatgggcacactggacctgtacggagctgcagacccctaccaacgactcacacgctcc
ccacgcaagaacagacagtccacctcagacttttgcatgcgtggtctgtctcacttttat
tcagattcaaagaaaaggatccgtacgtcctatcagagccttacagaactctccgataac
caggtatccatggacatggagagaagcaagtcacccacctcagttccctacccaagctcc
cttcactatgaccctcgctccatgcctgagcctgtggccagtctgagagccagccactgc
agtccagtcttttacttactggacaatgtaaagggacccggcagaaagttaagtctgcca
acagatcttaagactgatcttgatcatgtcaatggacattgcactagtcccacctcccag
ccctgctccgtggggaagcctcgcatcacaggggttcccgagggcccgcggctcacccgg
agagggcctggccgaccgcccttccgcaaggcccagtccgccgcttgcatggagatctct
ttgcctgtttcctcccacacagaaggtggccatgcgtccaggagggcaatgcttcagcag
ttgcatggagtcagtatgtactcccacgacgagcaccacaccacctcctacaactggagc
gagagagaaagtagagagaactcattcagtcgctcgcggagctccagtgtgtccagcatt
gatcgcgacaccaaggagtcagtgaccacgctgcagttcggagagtcctacggccgtaag
ggcgatgctctgcctaccgcctgcctgtgggtgggcaccagcctgggcgtggtcctgctc
ctgcccatatccatccccacagaagaggaggagaggatggaggagcccatcaccatgggg
cccagtggtaccgtcctgatgctaaaaggctctgtgttgcgatttgccttcctggactgt
gggggcgctctcattcagagtccctacgaggtgtggcgggaccccaacggtcccgaggac
cccgaccggccccgcaggcgcaagctgatcaacttctccccgtcatcatcccaggaggcg
tgcggtgacggtcacctggccgttgtgtgctctgagaagcaggccaaggtcatcctcatg
cccacccaggctgtcctgttcacccacaacatcaccgagtcctccttcctcctgcgggct
gacgttgtctccgtctgcaacagcgtctgcctggcctgcttctgcgccaacggacacatc
atgaccctaagtttgcccagtctaagacccctgatggatatcaactaccttcccctgacc
gacttgcgtatcgcccggacctttgtcttcactaacggaggccaggccctgtatctgagc
tctcctacagagatacagcgtctcacatacagccaggagatgacggacaacctacaggac
atgctgggggagctgttcactcctatagaaacaccagaggcccagaacaaaggattcctc
aagggcttctttgggggcaacgcccagaccttcgacagagaggagctgtttggggaggca
gcagcgggaaaggcctctcggagtttggcccagcacatccctggtccaatgggattggag
aacatgaaggctgcagccggcggcgtcgtgggggacctggcccgagcccgcatcgccctg
gaccagagaggagagagactgggcgagctggaggaacgcaccgcccttatgatgaacagc
gccgagaccttctccacacacgcccaccaggtgatgctgaaacataaggacaagaaatgg
tatcagctttaa
DBGET
integrated database retrieval system
