Oncorhynchus tshawytscha (Chinook salmon): 112225279
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Entry
112225279 CDS
T05605
Name
(RefSeq) protocadherin-17-like
KO
K16499
protocadherin delta 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112225279
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112225279
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
112225279
NCBI-ProteinID:
XP_024244837
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All DBs
Position
LG26:complement(17146521..17169358)
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AA seq
1109 aa
AA seq
DB search
MDMRLPVIFFLLFWAKARTLKNLNYSVPEEQGPGTVIGNIAKDAGFGPVERGEKSNFRVL
ENSAPHLIDVDPESGLLFTKQRIDRETLCRRNPKCQLSMEVFANDKEICMIKIDVVDIND
NSPGFPSDHINIDISENAAAGTRFPLTIAHDSDSGGNGIKTYQVTRDDYNTFSLDLKLRG
EGTIYPELVVQRPLDREDQSHHTLLLTAIDGGEYPRSGSMQINVRVTDSNDNSPVFDKPA
YVLELPENSPPGKMLIDLNATDQDEGSNGQVVYSFSGYASDRVQELFSIDPNTGVIKIQG
EIDYEENPTIEFDVQAKDLGPNPIPGHCKISVKVLDKNDNWPVISFVSVRQGAISEAAPP
ESVIALVRVTDKDSGRNGQLQCRVLGNVPFRLQENNDNFYTLLTDRPLDRELKDEYNVTI
VARDNGIPSLNYTKSFTVKILDENDNAPRFTKTIYVLQVPENNIPGEYLGSVLAHDPDIG
RNGTVSYSILPSHIGDVSVYTYVSVNPTNGAIYASRSFNYEQTKFFEFNVQAKDAGSPHM
ESSATVRVSVLDVNDNLPVIVLPLLLNDTAEIMIPRNVGLGYIVTTVRAVDHDFGESGRL
TYEISEGNEEHLFEMDPVAGEVRTAHAVWEDVAPAVELVVKVTDHGKPPLSAVAKLIIKA
STGAMAGGESGASGEQQHWDLSLPLIVTLCIISVLLLAVMTAIAVKSKHQDKEAGNYKCR
MAEYSNSNPPVGKGKKKRINKNEIMLVQSEMEERDSVSRMNVVSSPSLITSPICFDYQTT
SPLPLTLPRSEVMYLKTTSNSLTVPRAGCHSSFAGLTTETPMNRMSVIQTDNFPSEPNYT
SNRQPFAQSSSTFKDAERASLRDSGHGDSDQADSDQDTNKGSHCDTSAREAIKMKATAVN
GQPLEQGQGRSVHCTDECRALGHSDRCWMPKLRVGSQADSADNRTNLFIPVGMEAMVETE
IYGSLNRSAARKTLSTFGKEQRDSIILVANVKPYLKSQRGLSPLLQECSSVSSSPTKGDT
PLDSPTKGPREEVGRVGEGGSDSSAYGPPDGQCSPPHTELEDPSYLSCDLSPKSLSNSLI
HSSGIRSGIISQECGGVECVNLDQRDSGN
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgtcttcctgtcatctttttccttctcttttgggctaaagcccggactctg
aaaaatctaaattattccgttccagaggagcagggacctggaactgttatcggaaacatt
gctaaggatgccggatttggaccggtggagagaggggaaaaatctaactttagagttctg
gagaattctgctccacatctcattgatgtggacccggagagtgggctgctttttaccaaa
cagcgaattgacagggagacattgtgcagacgcaaccccaagtgtcagctctccatggaa
gtgtttgccaacgacaaggaaatatgcatgatcaagattgatgtagtggatataaacgac
aactcgccaggttttccctcagatcacatcaatattgatatttcagagaatgcagctgct
gggacacgtttccctctaacaattgcgcatgactcagattctgggggaaacggaataaag
acttatcaggtcaccagagatgattacaatacattttctttggacttgaaattgaggggc
gagggaaccatctatccggaattggtagttcagcgacctctagatagggaggatcagtcc
catcataccctccttttgacagccattgatggaggggagtatccaagatcagggtccatg
caaatcaatgtgagagttactgattcaaatgataatagcccagtatttgacaaacccgcc
tatgtgctggagctccctgaaaactcaccacctgggaaaatgctgatagacctgaatgca
acagaccaagatgagggcagcaatggacaggtagtctattctttcagtggatatgcatct
gatagagtccaggagttgttttctattgaccccaacacaggtgtaataaagattcaggga
gaaattgactatgaagagaatccaaccattgaatttgacgtgcaggccaaggacctgggg
cctaaccccatccctggccattgtaagatttcagtcaaagtgcttgacaagaatgataat
tggcctgtcataagttttgtctcagtccgccagggagctatcagtgaggcagcacctcca
gaatctgtcatcgccctggtgagagtcactgataaagattctggaagaaatggccagctc
caatgcagagtgcttggcaatgtaccattcaggctgcaggaaaacaatgataatttttac
actctgctcacagacagacctctagacagggaactgaaagacgaatataacgtgactata
gtggccagagacaacggaataccttcgttgaattacaccaaatcgttcacagtgaaaatc
ttagatgagaatgataatgcaccgcgtttcaccaagaccatctatgtgctccaggtgcct
gagaacaacatcccaggggagtacttaggctcagttctggctcatgatccagatataggt
cggaatggaactgtgtcttactccattttgccgtcgcacatcggagacgtgtcagtttac
acctacgtgtctgtcaatcctaccaacggagccatatacgcctcaaggtctttcaactac
gaacaaactaagttctttgagttcaatgttcaagctaaagacgcagggtctcctcatatg
gagagcagtgccacagtcagggtcagtgtgcttgacgtcaatgacaatctaccagttatt
gtattacccctcctgctaaatgacactgcagaaatcatgatccctagaaatgtcggcctg
gggtacatagtgaccacggtgagagcagtcgaccacgacttcggcgagagtggtcgtctg
acctacgagatctctgagggtaacgaggagcacctgtttgagatggaccctgtggccggc
gaggtcaggactgcccatgctgtgtgggaggacgtggccccagctgtagagctggtagtg
aaggtaaccgatcacggcaagcccccactttctgctgtggccaagctgatcattaaggcc
agcacaggagccatggcaggaggggagtccggggccagcggggagcagcagcactgggac
ttgtccctgcccctcatcgtcaccctttgcatcatctctgtcttgctgctggctgtcatg
actgccatcgccgttaagtccaagcatcaagataaggaggctgggaattataagtgccgc
atggctgagtactccaactccaatcccccagtggggaagggcaagaagaaaaggatcaac
aagaatgaaatcatgctggtgcagagcgagatggaggagagggactctgtgagcaggatg
aacgtggtgagcagcccgtctctcatcacctcacctatctgtttcgactaccagacgacc
agccccctgcctctcacgctgcccaggtcagaggtcatgtacctgaaaaccacctccaac
agcctgacggtgcctcgggctggctgtcactcgagcttcgcagggcttaccacagagact
cctatgaatagaatgtcagtgatacagacggataattttccctcggagcccaattatacg
tccaacaggcagccatttgctcaaagcagctcaacatttaaggatgcagagcgagcaagc
ctccgagacagtggccatggtgatagtgaccaggctgatagtgaccaggatactaataaa
ggctcccactgcgacacgtctgccagggaggccatcaagatgaaagccacagcggttaat
ggccagcctctcgagcagggacaaggcagatctgttcactgcacagatgaatgtcgtgca
ctgggccattctgacagatgctggatgccaaagctacgtgtaggaagccaagcagacagc
gccgataatcgcaccaaccttttcatcccagtgggaatggaggccatggtggagacagag
atttatggcagcctcaaccgcagtgcagccagaaaaaccctcagcacgttcgggaaggag
caacgggacagcatcatcctagtagccaacgtcaaaccctacttaaagtctcagcgcggc
ctcagtcccctgctgcaggagtgctcctccgtgtccagcagccccaccaagggggacaca
cccctggactccccaaccaaagggcccagggaggaggtggggagggttggggaggggggc
tcagacagcagtgcctatggtcccccagatggccagtgttcaccgccccatacggaactg
gaggatccgtcgtacctgtcctgcgacctcagtcccaagtccctgtccaacagccttatc
cacagctctgggatcagatctgggatcatcagccaggaatgtgggggggtggagtgcgtc
aatctggaccagcgggactctgggaactaa
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