Oncorhynchus tshawytscha (Chinook salmon): 112225573
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Entry
112225573 CDS
T05605
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112225573 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112225573 (bard1)
04121 Ubiquitin system [BR:
otw04121
]
112225573 (bard1)
03036 Chromosome and associated proteins [BR:
otw03036
]
112225573 (bard1)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112225573 (bard1)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
112225573 (bard1)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
112225573 (bard1)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
112225573 (bard1)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
112225573 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
112225573
NCBI-ProteinID:
XP_024245422
LinkDB
All DBs
Position
LG26:complement(35456755..35485824)
Genome browser
AA seq
828 aa
AA seq
DB search
MDPDLCTDEGWTKTKEAVAHFRKLLLCSKCSKLMNEPVCLGVCEHMLCRSCAGPQAGEGC
VVCHSPAWVKDIRINRQLSNITELYGNLDSLLNPTGSDYSDALPITPPAQSDKSVLKHKK
NFKIWFSPRSRKVRCRVEKPAVVPLPEVGSGTVKAAPRHPETLPESKGKDLSVFNFNSSS
QDSGSSSPQRVTNYEKKKATKKTRNGGGVRKPAAGGGQKPTKHEETKQNVKTQRLEAINQ
QWGFGGVREGDVGEEEEQVTAEEGEHRSSKRVSFQSPATLPATAEPQKEDLPQGNTIILS
PSRSILKVVQPGENVPHSEDQDSPSPHTTPSQLDKISAKQHSKPNEEMTKKPDLHSPPKR
TPKRFCVEDKNISQCTPKKPRASPGQGRRPEVDRVALPAMHTSPSPAACPRQGRTSTSTR
ISREGEQQWGSSPCSPAPLGKRSPGRLSQNSPAVVKRNHKGETPLHLAAIKGDVETVKEL
LDQGADPNLKDNAGWTPLHEACNLGHLGVVEVLVERGGVLLNTPGYKNDSPLHDAVRNGH
TGIAMLLLQHGASQSVLNMFGLRPVDYAVSPEMQAILLAASEGPHPVNSPLSPSPSLNKA
SEGVRHEEQAVVLGSKLSQSQQTRLAKLGHLLGGKRADAFSCSVTHVVVPDGPMPTTLST
LLGLLNGCWVLNFSWVEACLQADSWISESDHEAGAGPQRSRINRHSLLPPLLDGCFFYLM
GSFRKPPRDELLQLVREAGGQILTRQPKPDSDVTQTLSAAAYHASLGSDQALCTQYIIYD
PQGSYRPPRVRLGKVWSAPSTWVVNCISAFQLLPVPELESQTHLVCNQ
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgatctttgcacggacgaaggctggacgaaaacgaaggaggctgtcgcgcat
tttcgaaaacttctgctgtgctcaaaatgttcaaaactgatgaacgaacctgtgtgcctc
ggggtttgtgaacatatgctttgcaggtcgtgtgctggtcctcaggctggagagggatgt
gtggtgtgtcacagtcctgcctgggtgaaagacattcggatcaacagacaactcagcaat
atcacagaactctatggcaacctagactcactgctcaatcccactggctccgattactcc
gatgcccttcccattacaccaccagcacagtcagataaatctgtcttaaagcacaagaag
aacttcaagatctggtttagtccccgcagccgcaaggtgcgctgccgggtagagaagcct
gcggtggtgcctctcccggaggttgggagtgggactgtgaaagctgctccaagacatcct
gagacactacctgagtctaaaggcaaagacctgtctgtcttcaacttcaactcctcctcc
caagactctggctcatcctctcctcaaagggtgactaactatgaaaagaagaaagcgact
aagaagacgagaaatgggggtggtgtcaggaagcctgcagctgggggtgggcagaaacca
accaagcatgaagaaaccaagcagaatgtcaagacacagaggctggaggcaatcaaccag
cagtggggctttggcggagtgagagaaggagatgtcggagaggaagaagagcaggtcact
gcagaggaaggagagcacaggtctagtaaaagagtttccttccaaagtccagccaccttg
cctgccactgcggagcctcagaaggaggatctccctcaggggaacaccataatcctcagc
cccagcagaagcatcctgaaggtggttcagccaggagagaacgtcccacactctgaggac
caggacagtccaagcccacacaccaccccttctcagctggataagatatctgcaaagcag
cactctaaaccaaatgaagaaatgactaaaaagcctgacctgcactcccctcctaagcgc
actcccaaaagattctgtgtggaagataaaaacatctcacagtgtaccccaaagaaaccc
agggcatctcctggccagggtagacgtccggaagtggacagggttgcactcccagccatg
catacctcgccctcccccgctgcctgccccagacagggtcgaacctccaccagcaccagg
atatccagagaaggagagcagcagtggggcagtagcccgtgttcccccgcccccctgggg
aagagatccccgggcagactgtcacagaacagcccagcggtagtgaagagaaaccacaag
ggagagacacccctacacctggcagcaataaagggtgatgtggagacggtgaaggagctc
ctagaccaaggggctgaccccaacctgaaagacaatgctggatggacaccgctgcacgag
gcatgtaacctgggccacctgggtgtagtggaggtgttggtggagaggggaggcgtgctg
ttgaacacaccaggctacaagaacgattctcctctacacgacgctgtcaggaacggacat
actggcattgccatgctactgctgcagcacggggcttcacagagcgtcttgaatatgttt
ggccttcgccctgtggactatgccgtgagcccagagatgcaggcaatccttctggcagcc
tctgaaggaccccacccagtcaactcacctctcagtccttcacccagcctcaataaggcc
agtgaaggtgtgagacatgaggaacaggcagttgtactgggtagtaaactgtcccagtcc
caacagacccggctggccaaactgggacatctcctgggaggaaagagggcagacgccttc
tcctgctctgtcactcatgtggtggtcccagacgggccgatgcccaccaccttgtccact
ctccttggcctcctgaacggctgctgggtcctcaactttagctgggtagaggcgtgcctg
caggcagacagctggatctccgagagtgaccatgaagcaggagcaggaccgcaacgcagc
cgcattaacagacacagcctgctgcccccgctgttggacggttgtttcttctacctcatg
ggctccttcaggaagccccccagggacgagctcctccagctggtgagagaggcagggggc
cagattcttacccgacagcccaaaccagacagtgatgtgacccagaccctgtctgctgca
gcctaccacgcctctctgggctcagaccaggccctgtgtacccagtacatcatctatgat
ccccagggctcttacaggccacccagggtgaggttaggaaaggtgtggtcagctccatct
acatgggttgtaaactgtatatcggccttccagctactgccagtgcctgagcttgaatca
cagacacacctggtgtgtaatcagtga
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integrated database retrieval system
