Oncorhynchus tshawytscha (Chinook salmon): 112225622
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Entry
112225622 CDS
T05605
Name
(RefSeq) methyl-CpG-binding domain protein 5 isoform X1
KO
K23219
methyl-CpG-binding domain protein 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112225622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112225622
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
112225622
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
112225622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWWP
Motif
Other DBs
NCBI-GeneID:
112225622
NCBI-ProteinID:
XP_024245500
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All DBs
Position
LG26:complement(42141583..42185485)
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AA seq
1342 aa
AA seq
DB search
MNRTKKYEGLCSEGKPPAEVPIGWQRRITHSGVVYISPSGSVLACLEQVKSYLLTDGTCK
CGLECPLTVHEIFSFDPGAAVKHRMAEDARADTDFTKLCIHKRKIIATATLHRNMESLHP
SLALASHGSGTGSVTVGPMSHPAIKNNMYDGPPNKMTIPGQRYYNHELGSPQRDPYSGYS
RTRLVGSDRCSQQRSPYRIRHSVLLSPSSSTSCGSQHYGDGTPSPRTELLGSPEPNMLGF
HGACSPGSALMNGDRFTPLSPPSVLLHGSPSATQPSCAIAGRTNVPVNAKSPNMQKPFYS
FPHNNFQHKLQPACHPHPQSHLSLSQLPPSSEMDPLGILDPIPSKAPSQGPLVSNAHSQV
PPMNVNIPPTSVPLPSNLPLPTGKSGHVGHGQRVQHHPTPSSVSSSPIVSPVHMAGPVLA
RMEESPHRSRCSSGSSEHGSFVHPTGLQVPCGGSKPLPRSPRASLGSPRPAMPPSSYKMD
KLHHLNDNPNYLPGGMKSSLSRHSNSMCPPAPGSDSVLQRNHSVGMPLNKMLDQQNPASF
PASSLLSAAAKAQLVNQNKHPDSAAAAGTEAHSGSGLGHPGLVGGGRGGNLDGHSTLNQR
YLPNPGPLASEVQTGRAALRDKLMGMAQQREANRKRKLSNDVSGGGVNNDRAFDVLKHPM
GGSGSSSASFPEPLRRMFQQGSLPPNTSMAQLLQSMSHQSAHNGPSHVGHSPARSSKSPF
LEEALPHMSALQQSLRGPQLQGRTLVPFFQNMNNEGQISGQGLNTEQFNGPMNVMQDPAL
AGNVGVLGYGGRQHAAMGSMQDNPNSHQQQQFGHYQKPSQVQCNPHFRGRAGLPPMMSNG
SVQALSKSVEVSSSLSCELRQAQEESLQSLIRSSQANTQQQLVQGLGRHSIQSQQLHRFQ
SQGSHPVAPLPGGAASNPMNSLLQRFQGGLPERIPQPNRAMMSQPGIMSMSQPSAPCLQE
SHREYQSPQGLHSGGGEVIDPIHREAMGMASKSTSNVITSAGGSSSFAATVVCEPVDLSH
AVNSVIHTGPLRSYREPVPEHRHHPKVGRPRKKTPERNNIFSPVAMESPTRFHSPRRGAQ
RRQWDGEVAAKEQAGLWHDDEPLQLLSLAQGRNGTYPERPKGQAHLGPQDQTPLQVPSGM
YAHMNGNGRDHTSGRPRHPSLSPPEGHFTKDSSLFNGHLNSQLDGQLNGHCYNRYYNGHL
NGSLSGEEDLRPGDSPSSSEGLQLHHRPRTQTHYPGELLWGQGKGFPPWPGKMGSEGHMY
SLGMVNSIQGKVESDNFQRTLTEDLETLHKANKITRNGGKRNNNLEAAIQEAMSELDKMT
GNMSQRERQVKTPKPKRRKISR
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaacaaagaagtatgaaggtctgtgttctgaggggaagcccccggctgaagtc
cctataggttggcagcggaggatcacccacagcggggttgtctacataagtcccagtggc
tctgtgttagcctgtctggagcaggtgaagagctacttgctgactgatggcacctgcaag
tgtggcctggagtgtcctctcaccgttcacgagatattcagctttgaccccggggcggcg
gtcaagcataggatggctgaggatgcacgagccgataccgatttcaccaagctgtgtatc
cacaagaggaagatcattgccacggcgacactgcacaggaacatggagtcactgcacccc
tcgctggctctggctagtcacggtagtggcactggttcggtgacggtgggtcctatgagt
catccagcaataaagaacaatatgtacgatggtccacccaacaagatgacaatacctggt
caacggtactataaccatgaactgggttctcctcagagagatccgtactctggttacagc
aggacaagactggtgggaagtgatcgctgtagccaacaacggtctccctatcgtatccgc
cacagtgtcctgctcagcccctcctcctccacctcatgtggctcgcagcattatggtgat
gggactccctccccaaggactgaacttctggggagtcctgagcccaacatgcttggtttt
catggagcttgcagcccaggctctgcccttatgaacggtgatcgttttacacctctctca
ccacctagtgttctgctccacggctcgccttcggccacccagccttcgtgtgccatagca
ggaaggactaatgtacctgtcaatgccaaaagccccaatatgcagaagcccttctacagc
ttcccccacaacaactttcaacataagctccagcctgcatgccatccacacccacagtcg
cacttgtccctgtctcagctccctccctcctctgagatggaccctcttggtatcctggac
cccattccaagcaaggctccaagtcagggtcccttagtgtcaaatgcccattctcaggta
ccaccaatgaatgtaaacatcccccctaccagtgtccctttgcctagcaacctgccttta
ccaactgggaagtctggacatgttgggcatggccagagggtccagcaccaccctacccct
tcatcggtctcgtcctcgcctattgtgtccccggtacatatggctgggcctgtccttgcc
aggatggaggagtcaccccaccgttcacgttgctcctccggatcttctgaacatgggagc
ttcgttcaccccacggggctccaggttccttgtgggggttcaaagccacttccccggtcc
cctcgggcctccttggggtcccctcgacctgcaatgccgccaagttcatataagatggac
aaactccatcacttgaacgataaccccaattacctgccaggggggatgaaaagtagtcta
agcaggcattccaactccatgtgccctccagctcctggttctgatagtgtccttcaaagg
aatcactcggtgggaatgccccttaacaagatgctagatcagcagaatcctgcttccttc
ccagccagcagtcttctgtcagccgcagccaaagcacagctagtgaatcaaaacaaacat
cccgacagcgcagcggctgcaggcacagaggctcacagtggcagcggtttgggacaccca
ggactggttggtggaggcagaggtgggaacctagatggacacagcactttaaaccagcga
tatctacctaatcctgggccattggcgagcgaggttcaaaccggaagagcagcattaaga
gacaaacttatgggtatggctcagcagagagaggcgaatcgcaagcggaaactgtccaat
gatgtcagcggtggtggcgtcaacaatgacagggctttcgacgtgctcaaacatccaatg
ggtggctcaggatcaagttcggctagctttccagagcctttgaggagaatgtttcagcag
ggtagcctgcccccaaacacctccatggcccagctactccagtccatgagccaccagagt
gcccataatgggccaagccacgtgggccacagcccagcccgatccagcaaatctcccttc
ttggaggaagctttgcctcatatgtcagctttacagcagagcttgcgggggcctcagctc
cagggcagaacgttggtccctttcttccagaacatgaacaacgaaggtcagatttcaggc
caaggtctaaacacggagcagtttaacgggccaatgaacgtaatgcaggatcccgcctta
gctgggaacgttggggtgctgggttacggtggtagacaacatgcagccatggggtcaatg
caggacaacccaaactctcaccagcagcagcagtttggacattatcagaaaccatcccag
gtgcaatgcaacccccacttcagaggcagggcaggattgcctcccatgatgtccaatggc
agtgtccaagccctctctaagtcagttgaggtcagtagttctctgagctgtgagctgagg
caggcccaagaggagagtctccagtctctcatcaggagcagccaagccaatacacagcaa
cagcttgttcagggtctgggtcgtcactccatacagagccagcagctccacaggttccag
agccagggctcccatcctgttgcccctctccctggtggtgctgcctccaaccccatgaac
agcctccttcagagattccaggggggtttgcctgagaggattccacagcccaacagagct
atgatgagtcaaccggggattatgtccatgtcccaacccagtgccccttgcctccaggag
agtcatcgagaataccagtctcctcagggccttcacagtggtgggggagaagttattgat
cctatccacagggaagcgatgggcatggccagcaagagcacgtctaatgtcattacatca
gcgggtggtagcagttccttcgctgctactgttgtctgcgagcctgttgacctctcccat
gcggtcaactctgtcatccacaccggccccctccgctcatatcgggagccagtgccggag
caccgacaccatcccaaggtgggccggccccgcaagaagacccctgaacggaacaacatc
ttctcccccgttgccatggaatctcctacaagattccattcgcctcgacgtggagcccag
agaagacaatgggacggagaggtggcggccaaggagcaggctggtctgtggcatgatgac
gagcccctccaactgctttccttagcccagggcagaaacggcacctacccagaaaggccc
aaaggtcaggcccacttaggcccccaggatcaaacaccactgcaagtccccagtggtatg
tatgcccatatgaacggcaacggtagggatcacacctcgggaagacccagacaccccagc
ctgtccccaccagagggccacttcaccaaggactccagcctcttcaacggacatctgaac
agccaactcgacggccaactcaacgggcactgctacaacaggtattacaatgggcacctg
aacgggagcctgagcggcgaggaggacctgaggcctggggactcgccctcctccagtgag
gggctccagctccaccacaggccaagaactcagacccactacccgggagagctgctctgg
ggccagggcaaaggcttccctccatggccaggcaagatggggagcgaggggcacatgtac
tcccttgggatggtgaacagcatacagggcaaagtagagtcagacaatttccagaggaca
ctaacagaggatctggagaccctacacaaagcaaacaaaataactagaaatggaggaaaa
cggaataacaacctagaagctgctatacaggaggctatgagcgagctggataagatgaca
ggcaatatgtcacagagagaacgacaagtcaagacccctaaacccaagaggaggaagatc
tccagatga
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