Oncorhynchus tshawytscha (Chinook salmon): 112225671
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Entry
112225671 CDS
T05605
Symbol
ercc1
Name
(RefSeq) DNA excision repair protein ERCC-1
KO
K10849
DNA excision repair protein ERCC-1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112225671 (ercc1)
03460 Fanconi anemia pathway
112225671 (ercc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112225671 (ercc1)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
112225671 (ercc1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rad10
HHH_5
HHH
HHH_2
CF222
Motif
Other DBs
NCBI-GeneID:
112225671
NCBI-ProteinID:
XP_042162881
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Position
LG26:47725287..47732768
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AA seq
383 aa
AA seq
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MDKKRFNINLDDSAFTKERAPVKPLFQPSSKAGQSASSSSSSTTSETKAQPAPPSSAGQP
LSYAEFIVQSKGHAPQRVPSAPQLSRVAAGTGTGIDTETGSLKQGPSQGAQGGPDVTSSS
SSVGCERPRAQGTKDPGSGGPPGLTQGEEGQRAGTEQKQGEGQGSEGSNILGHPKPVGSG
NSIIVSPRQRGNPILKFVRSVPWEFGDVVPDYVLGQTTCALFLSLRYHNLNPNYIHDRLK
LLGQTFTLRVLLVLVDVKDPHHSLKELARICIMADCTLILAWSPEEAGRYLETYKSYEKK
PADLLKEHVEKDYLSKVTDCLTTVKSVNKTDSITLLSTFSSLEGIITATKEDLVLCPGLG
PQKARRLYDVLHQPFLKAKKKDN
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaagaggtttaatatcaacctagacgactctgccttcacaaaagaaagagcc
ccggtgaaacccctgttccagccctcctctaaggcaggccagagtgcatcatcatcatca
tcatcaaccacctctgagaccaaagctcagcctgcacccccgtcgtctgctggccaacca
ctatcctacgcagagttcattgtccagagcaaaggccatgcacctcagcgagtcccctca
gctccacagctgtccagggtggctgcaggaacggggacagggatagatacagagactggt
agtttgaaacagggtcccagtcaaggagcacaaggtgggcctgatgtgacgtcgtcgtcg
tcctctgtggggtgtgagaggcctcgggcccaggggacaaaggatccggggtctggtgga
ccaccagggcttacacagggagaggaggggcagagggctgggactgagcagaagcagggg
gagggtcaagggtcagagggcagcaacatcctaggtcatcctaaaccagtggggtctggt
aatagtatcatagtcagccccagacagagaggaaaccccattctgaaatttgtgaggagt
gtgccttgggagtttggagacgtggtccctgactatgtcctgggacagacgacctgcgct
ctcttcctcagtctgaggtaccacaacctcaaccccaactacatccacgaccgtctcaaa
ctgttgggccagaccttcaccctcagggttctactggtgttagttgatgtgaaagaccct
caccattctctgaaagagctggctcgtatctgcatcatggctgactgcactctcatcctg
gcctggagtccagaggaggcggggcgttacctggagacgtacaagtcctatgaaaagaaa
ccagctgatctgctgaaggaacatgtggagaaagactacctgtcgaaggtgacggactgt
ctgaccactgtgaagtctgtcaacaagactgactcgatcactctgctgtcaaccttctct
tccttagaggggatcatcactgcaactaaagaggacctggttctctgtcctggactggga
ccccagaaggccagacgtctctatgacgtgctacaccagcccttcctcaaggccaagaag
aaagacaactga
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