Oncorhynchus tshawytscha (Chinook salmon): 112225764
Help
Entry
112225764 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent P/Q-type calcium channel subunit alpha-1A-like
KO
K04344
voltage-dependent calcium channel P/Q type alpha-1A
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112225764
04020 Calcium signaling pathway
112225764
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112225764
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112225764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
112225764
NCBI-ProteinID:
XP_042172014
LinkDB
All DBs
Position
Unknown
AA seq
2326 aa
AA seq
DB search
ILSTVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFFAILMF
AIIGLEFYMGKFHTTCFDIHTDEIREEVPCGTEAPSRLCPNGTTCRKYWLGPNYGITQFD
NILFAVLTVFQCITMEGWTDLLYYSNDASGSAWNWMYFIPLIIIGSFFMLNLVLGVLSGE
FAKERERVENRSEFLKLRRQQQIERELNGYLEWICKAEEVILADDEDPDAFDGTRRRPTI
KNHKNKTDLLNPEDGNGDLAVGSPFARASLKSSKLEGSNFHKRERRLRFFIRRIVKTPYF
YWSVLCLVGLNTMCVAVVHYDQPEPLSDFLYFAEFVFLSIFISEMGIKIYGLGSQPYFHS
SFNCFDCIVICGSIFEVLWGFIQPGTSFGISVLRALRLLRIFKVTKYWASLRNLVVSLLN
SMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFESGTPSTNFDTFPAAIMTVFQILTGED
WNMVMYDGIESQGGVNNGMVFSVFFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKEEEA
ASKKNALQKAKEVAEVSPQSAANLSIAAEKVNSTGHNASDPFLDCKEQQKNNKGGNKSVW
EQRTKELRKQTLMTSREALYNELDPEDRWKVNYSRHIRPDMKTHTDRPLVVDPQENRNNN
TNKTTKEPDPPQQQHADELVRKQTHVHERGGGGGGGGGSGSGSGPGRPYERADSTESRRS
RKESKEHQELQHHHSSHTRLDATMLGQSGEERPQRRHHHPRGQVGSSEHRKPRQHRMPPE
DEEGGGGGGGGGGERRHKSRGTEGEGEGEQEGGDGGERRQRRHRHGTQSGCDGEGKRTRQ
HRRKDGPNLSTTRPIQKSLCRQDSQYSEDMDNVMNSKLATSQPKLHPGYTQQPCPASGLP
SPANHTTPGPGLGPAGLNTHLTNSSSHLGLDGSLVPAYGSSTRIPDHTAVDIPPMFPSHN
AILQVNKNANTEPLPKKEDKEDDDDEKGDEDGPKPMPPYSSMFILSTTNPFRRLCHYIVT
LKFFEFGILSTIAMSSIALAAEDPVWPESPRNNVLRYFDYVFTGVFTFEMLIKMVDLGLV
LHQGSYFRDLWNILDFIVVSGALVAFAFTSSSGGSSKGKDISTIKSLRVLRVLRPLKTIK
RLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVVAVQLFKGRFFYCTDESKEFERDCR
GEYLVYERNNEVKAQKREWKKYDFHYDNVLWALLTLFTVSTGEGWPQVLKHSVDATYENQ
GPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEDYSLEKNERGCIDF
AINAKPLTRHMPKNKQSFQYRMWEFVVSPPFEYTIMAMIALNTIVLMMKYDGASPAYEAV
LANLNIVFTSLFSMECVLKIIAFGVLNYFKDAWNIFDCVTVLGSITDILVTELGMNNFIN
LSFLRLFRAARLIKLLRQGETIRILLWTFVQSFKALPYVCLLIGMLFFIYAIIGMQLFGN
IGMEEEEGSAINEHNNFRTFFQALMLLFRSATGEAWHDIMLSCLGGKLCDPLAGNTEPEC
GSQFAYLYFVSFIFFCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEYVRIWAEYDQA
ACGRIHYKDMYSLLRVIDPPLGLGKKCPHRVACKRLLRMDLPVADDNSVHFNSTLMALIR
TALDIKIAKGGVDKHQMDAELRKEMMAIWPNLSQKTLDLLVTPHKSTDLTVGKIYAAMMI
MEYYRQSKAKRSQARLEAEQNRTTLLFQRVEPPSPIQDGPLCLPPTQPADPVNTLPVEGG
VPESQSWVTVRAQEMSQRVGSWSPEGQHSEDGLDSRHNSQTVEMREMGRDGYSDTEHFQP
MEGHGRAASMPRLPGDNQDVCQTDLQTITDNSPMKRSASSLGHSRSGRGQRERGGADDYA
MEYVIPEEGGAPRHSHRRRDRSHRASERSLCRYTDADTAGLGTDLSTTTQSGDLPPKEKD
RDRDRDRGRQKDRKHHHHHHHHHSGSVDKERYTPDRADRGGEHGGHRQPRGDRDHDRDRE
HDRRWSRSPSEGRECMTHRQGSSSVSESPAPSTSGTSTPRRGRRQLPQTPATPRPHVTYS
PVVRKAMATPPGAQPLGRNPAPAPHRFSPEPPQGPPPPHHGSPNQACHLPPRWGDGGGGG
GESGSLEGDSCFYNQDYQDYDREHHKPPPYEQSPTQGNPHKPHPLNHPTLPVLNHPPIPQ
QQHPINPHPNNPHPNNPHSRTSPRTSRHAPPPNTIPTPKCSSLPTRRLPNGYRASSPSSQ
HHHGPTHPGPHKVPLPSLEGPALKTCTNHTTTRMTTGASRWRLWME
NT seq
6979 nt
NT seq
+upstream
nt +downstream
nt
gatcctgtctacagtgggatcggacttcgatttgcggactctgagagcggtccgtgtact
gagacccctcaaactggtgtctgggatacccagcctccaggtggtcctcaagtccatcat
gaaggctatgattccactgctgcagattggcctgttgctattcttcgccatcctcatgtt
cgctatcatcggcctggagttctacatgggcaaattccatactacctgctttgacattca
cacagatgagattcgtgaggaagttccgtgtgggaccgaagccccgtcgagactatgtcc
aaacgggaccacgtgtcgaaagtattggctgggtcctaactacggcatcacccagtttga
caacatcctgtttgccgtgctaacagtcttccaatgtattaccatggagggatggactga
cctgctctactatagcaacgatgcctcagggagcgcgtggaactggatgtacttcattcc
cctcatcatcatcggctctttcttcatgttgaacctggtcctgggtgtactgtctgggga
gtttgccaaagagagagagcgagtggagaacaggagtgagtttctaaagctgaggagaca
gcagcagatagagagagagctcaatggatacctggaatggatttgtaaagcagaagaagt
gatcttagcagatgatgaagaccctgatgcctttgacggcacccgcaggagacccaccat
caaaaaccacaagaacaaaacagatctccttaacccagaggatgggaatggagacctggc
agtgggttctccctttgcgcgggccagtctgaagagttcaaagttggagggctctaactt
ccataagagggagcgtcgtctgcgtttcttcatccgacgcattgtgaagaccccgtattt
ctactggagtgtactgtgtctggtgggacttaacaccatgtgtgtggctgtagtacacta
cgaccagcctgaaccactctcagacttcctctactttgcagagttcgtcttcttgagtat
cttcatttctgagatgggtataaagatttatggactggggtcacagccttactttcactc
ctcctttaactgctttgactgcattgtaatatgtggcagcatattcgaggtgctgtgggg
ttttatccagcctgggacatcctttggtatcagtgtattacgagctctaaggttactgag
aatcttcaaagtcaccaagtactgggcgtctttgaggaacctggttgtatctctgctcaa
ctccatgaaatccattataagcctgctcttcctcctcttcctctttatcgtcgtcttcgc
tctgttgggcatgcaactcttcggaggacagtttaattttgaatctggcactccctcgac
caactttgatactttccctgcagcaataatgactgtgttccagatcctgaccggagaaga
ctggaacatggtcatgtatgatggaatagaatctcagggaggagtcaacaacgggatggt
cttctcagtcttcttcatcgtgctcacactttttggcaactacactctgctgaatgtgtt
cttggccattgctgtggacaatctggccaacgcacaggaactcactaaggaagaggaagc
cgcttccaagaaaaatgctttgcaaaaagccaaggaggtggccgaagtcagccctcagtc
tgcagccaacctgtctatagcggccgagaaagtaaacagcacaggtcacaacgcttccga
cccctttctggactgtaaggagcagcagaagaacaataagggtggtaataagtctgtgtg
ggaacagaggaccaaggagctgaggaaacagactctaatgaccagcagagaggccctcta
caacgaactggacccagaggaccgctggaaggtgaactactcccgccacatccgtcctga
catgaagacccatacagaccgccctctagtggtggacccccaggagaaccgcaacaacaa
caccaacaagaccaccaaagagcctgatccccctcagcagcagcacgctgacgagctggt
ccgcaagcagacacacgtccacgagagaggaggtgggggaggaggaggtgggggctcagg
gtctggttcaggccctggaaggccttacgagcgggcagactctacggagagccgcaggag
ccgtaaggagagcaaggagcaccaggagctccaacaccaccactcctcccatacccgcct
agatgcaacgatgctgggacagagtggagaggagaggccccagagaaggcaccaccaccc
acggggccaggtgggctcatcggagcacaggaaaccccgccagcaccgcatgcccccaga
ggacgaagaggggggaggtggcggtggtggaggaggaggggaaaggcgacacaagagcag
ggggacagaaggagaaggcgagggggagcaagaagggggtgatggaggtgagaggaggca
gagacggcatcgccatggcactcagtcagggtgtgatggtgaggggaagaggacgcggca
acaccgcaggaaggatggtcccaacctgtccaccacacggcccatccagaagagcctctg
tagacaggacagtcagtacagcgaggacatggacaatgtcatgaacagtaaactggccac
cagccagcccaagctacacccaggctacacccagcagccctgcccagcctcgggcctccc
cagcccagccaaccacactaccccaggcccaggcttgggccctgcaggcctcaacactca
cctgaccaacagcagctcccacctgggcctagatggaagcctggttcctgcatacggaag
tagcacccggataccggaccacacggcagtggacataccacccatgtttccttcccacaa
cgccatattgcaggtcaataagaatgctaacacggagcctctgcctaagaaggaggataa
ggaggatgatgatgatgagaagggtgatgaagatggacccaaaccaatgcctccctatag
ctccatgttcatcctctctaccaccaacccgttccggagactatgccactacattgtgac
cctgaaattctttgagtttggtatcctgtctaccatcgctatgagcagtatcgccctggc
agcggaagaccccgtctggccagaatcacctcgcaacaatgttctgcgctactttgacta
tgtgtttacgggagtgttcacctttgagatgttgattaagatggtggatctgggcctggt
gttgcaccagggctcctatttccgtgacctgtggaacatcctggactttatagtggttag
tggtgctctggtggccttcgccttcacgagcagtagcgggggaagcagtaaggggaaaga
tatcagcacaatcaagtctctgagggttctgagagtgttgcgacctctgaagactatcaa
gcgtcttccaaagctcaaggctgtgtttgactgtgtggtcaactccctgaagaacgtcct
gaacatcctcatcgtctacatgctcttcatgtttatttttgctgtggtggccgtgcagct
gttcaaagggagattcttctactgcactgacgagtccaaagagtttgagcgcgattgcag
gggcgaatatctagtctatgagcggaataatgaagtgaaggcgcagaagcgggagtggaa
gaagtacgatttccactacgacaacgtgctttgggccctgctcaccctcttcaccgtgtc
taccggagaggggtggccgcaggtgctgaaacattcagtggatgcgacctatgagaatca
gggcccgagcccggggtaccggatggagatgtccatcttttacgtggtgtacttcgtggt
cttccccttcttcttcgtcaatatcttcgtagctctcatcatcatcactttccaggagca
aggagacaagatgatggaggattacagtttagagaaaaacgagagaggctgcatagactt
cgccattaatgccaaaccgttgacgcgacacatgcctaagaacaagcaaagcttccagta
ccgcatgtgggagtttgtggtgtcgccgccattcgagtatacaatcatggctatgatcgc
gctcaatactatcgtactgatgatgaagtatgacggagcctctccggcctacgaggctgt
gctggccaacctgaacatcgtgttcacctcgctgttctccatggagtgtgtactcaagat
catcgcctttggagtgctaaattacttcaaagatgcctggaacatttttgactgtgtgac
agtcctgggcagcattacagatattttagtgactgagctcgggatgaataacttcatcaa
cttgagtttcctgagactgttcagggctgccaggctcatcaaactgctccggcaaggaga
gaccatccgcatcctgctctggacctttgttcaatccttcaaggcgctgccgtacgtgtg
cctgcttatcggcatgctgttcttcatctatgccatcatcgggatgcagctgtttgggaa
catagggatggaggaggaggaagggagcgccatcaacgaacacaacaacttcaggacttt
cttccaagctctcatgctgctcttcaggagtgccacgggcgaggcgtggcatgacatcat
gctgtcgtgtcttggagggaagctctgtgatcctctggcagggaacactgaaccagagtg
tggcagccagtttgcctacctctactttgtgtccttcatcttcttctgctcctttctgat
gctgaatctgttcgtggctgtcatcatggacaactttgagtacctgaccagagactcctc
catcctcggcccacatcatctagacgagtatgtcaggatatgggctgaatatgaccaagc
agcttgcggtcgcattcattataaggatatgtacagtttattgcgagttatcgacccgcc
tcttggcttaggaaagaaatgcccccatagagtggcctgcaagaggctgctgcggatgga
cctcccggtcgccgacgacaactcagtccacttcaactccaccctgatggccctgatccg
cacggcgctggacatcaagatcgccaagggaggtgtggacaaacaccagatggatgcaga
gctgaggaaagagatgatggcgatttggcccaatctctcccagaagaccctggacctctt
agtcacgccacataagtcaacagacctgacggtggggaagatctacgctgccatgatgat
catggagtactacaggcagagcaaggccaagcgctctcaggcgcggctagaggcggagca
gaatcgaacgacattactgtttcagcgcgtggagccgccctcccccatccaggatgggcc
tctctgcctccctcctacccaaccagcagaccccgtcaacaccctaccggtggagggggg
ggttccagagagccagtcgtgggtgacagtgcgggctcaggagatgtcccagagagtagg
cagctggagtcctgaaggacagcactctgaggatggcctggacagcaggcataactcaca
gacggtagagatgagagagatggggcgtgacggttactcggataccgagcactttcagcc
aatggaaggccacggaagggccgcttccatgccacgccttccaggcgacaaccaagatgt
ttgccagacagacttacagactattacagataatagtcctatgaagcgctcggcctcctc
ccttggtcacagtcgatctgggaggggccagagggaaaggggaggggccgatgattatgc
aatggagtatgtgatccccgaggagggcggagcaccgaggcacagccaccgacgccgcga
ccgaagccaccgggcctccgagcggtcactgtgtcgatatacagacgcagatacagcagg
actgggcacagacttgagcaccaccactcagtcaggtgacctgccacccaaggagaagga
ccgtgaccgcgacagagaccgcggtcggcagaaagaccgcaaacaccaccaccatcacca
ccaccatcacagtggctctgtggacaaggagcgctacacaccagaccgcgccgaccgggg
gggagagcacggtggtcacagacagccccgaggagacagagaccacgaccgggataggga
gcacgaccgtcgttggtcacggtcacccagcgagggcagagagtgcatgacacacagaca
gggcagtagttcggtgagcgaaagtcccgctccctctacctcggggaccagtaccccgag
acgaggccgtcggcaactccctcagaccccggcaacgccccgcccacacgtcacctactc
tcctgtcgtccgtaaagccatggccacacctcccggagcccagcccctggggcgcaatcc
cgcccccgcccctcaccgcttttcccctgagcccccccagggacctcccccaccccacca
tggctcacccaaccaagcctgccacctccctccccgctggggggatgggggaggaggagg
aggagagagtgggtcgctggagggcgacagctgcttctacaaccaggactaccaggatta
cgaccgtgagcaccacaaaccgcctccctacgagcagagccccacacagggcaaccctca
caaacctcaccccctcaatcaccctactctccccgtgctaaaccatcccccaatcccaca
gcagcagcaccctatcaacccgcacccaaacaacccccaccccaacaacccccactcccg
cacctcgcccaggacttcccgccacgcgcccccacccaacaccatccccacccccaagtg
cagcagcctccccactcgacgcctccccaacggctaccgtgcctcctccccctcctcgca
acaccaccacggccccacccaccccgggccccataaggtccccctccccagcctagaggg
ccccgcactaaagacctgcacgaaccatacaacaacacggatgacaacaggtgctagccg
ctggagactatggatggag
DBGET
integrated database retrieval system
